Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M5D45_RS02590 Genome accession   NZ_CP097330
Coordinates   558847..559911 (+) Length   354 a.a.
NCBI ID   WP_144197272.1    Uniprot ID   A0AAE9I1V0
Organism   Cupriavidus campinensis strain G5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553847..564911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5D45_RS02570 (M5D45_02570) - 554026..555666 (-) 1641 WP_250025056.1 MFS transporter -
  M5D45_RS02575 (M5D45_02575) - 555970..556347 (-) 378 WP_250025057.1 DUF4212 domain-containing protein -
  M5D45_RS02580 (M5D45_02580) - 556344..557909 (-) 1566 WP_250025058.1 sensor histidine kinase -
  M5D45_RS02585 (M5D45_02585) - 557922..558611 (-) 690 WP_144197271.1 response regulator transcription factor -
  M5D45_RS02590 (M5D45_02590) recA 558847..559911 (+) 1065 WP_144197272.1 recombinase RecA Machinery gene
  M5D45_RS02595 (M5D45_02595) recX 559997..560455 (+) 459 WP_144197273.1 recombination regulator RecX -
  M5D45_RS02600 (M5D45_02600) - 560793..561467 (+) 675 WP_250025059.1 DUF2889 domain-containing protein -
  M5D45_RS02605 (M5D45_02605) sucC 561557..562723 (+) 1167 WP_250025060.1 ADP-forming succinate--CoA ligase subunit beta -
  M5D45_RS02610 (M5D45_02610) sucD 562808..563689 (+) 882 WP_092291999.1 succinate--CoA ligase subunit alpha -
  M5D45_RS02615 (M5D45_02615) - 563969..564664 (+) 696 WP_250025061.1 TerC family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37489.03 Da        Isoelectric Point: 5.0508

>NTDB_id=688619 M5D45_RS02590 WP_144197272.1 558847..559911(+) (recA) [Cupriavidus campinensis strain G5]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEIEKDIEVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYAGKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGKDNAREYLRE
NPDIAAEIENKVRAALGVVAMNAAAVAAPAEIEG

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=688619 M5D45_RS02590 WP_144197272.1 558847..559911(+) (recA) [Cupriavidus campinensis strain G5]
ATGGACGACAAGAAGGCCGGCGCCGGCGTGAGCGCTGAGAAGCAGAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGTCTGGGCGATGGCGAGATCGAAAAGGACATCGAGGTGGTGTCCACCGGCTCGC
TGGGGCTCGATATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTGGAGATCTATGGTCCGGAATCGTCGGGC
AAGACCACGCTGACGCTGCAGGTAGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTTATCGACGCGGAACACGC
GCTGGACGTGAACTACGCCGGCAAGCTGGGCGTGAACGTGGGCGACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGG
CCCTGGAAATTACCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTGGCCGCGCTGGTGCCG
AAGGCCGAAATCGAGGGCGAGATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTTGGTT
CACCTGAAACGACTACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATC
AAGAAGGGCGACGACGTCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCGCCGTTCCGCGAGGC
GTTCTTCGACATCCTCTACGGCCAGGGCATTTCCCGGCAGGGCGAGATCATCGACCTTGGCGTGGATGCCAAGATCGTCG
AGAAGTCGGGCGCGTGGTACAGCTACAACGGCGAAAAGATCGGCCAGGGCAAGGACAACGCGCGCGAATACCTGCGCGAG
AACCCTGACATCGCCGCTGAGATCGAGAACAAGGTCCGTGCGGCGCTGGGCGTGGTGGCAATGAACGCCGCGGCCGTGGC
CGCACCGGCCGAAATCGAAGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

85.47

99.153

0.847
  recA Pseudomonas stutzeri DSM 10701

75

93.785

0.703
  recA Acinetobacter baylyi ADP1

72.059

96.045

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.938

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Acinetobacter baumannii D1279779

72.205

93.503

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.684

91.243

0.672
  recA Vibrio cholerae strain A1552

73.684

91.243

0.672
  recA Glaesserella parasuis strain SC1401

72.531

91.525

0.664
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.938

0.607
  recA Helicobacter pylori 26695

65.046

92.938

0.605
  recA Helicobacter pylori strain NCTC11637

64.742

92.938

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.742

92.938

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

64.724

92.09

0.596
  recA Streptococcus mitis SK321

60

97.458

0.585
  recA Lactococcus lactis subsp. cremoris KW2

62.349

93.785

0.585
  recA Streptococcus mitis NCTC 12261

61.446

93.785

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.462

91.808

0.573
  recA Streptococcus pneumoniae R6

61.145

93.785

0.573
  recA Streptococcus pneumoniae Rx1

61.145

93.785

0.573
  recA Streptococcus pneumoniae D39

61.145

93.785

0.573
  recA Streptococcus pneumoniae TIGR4

61.145

93.785

0.573
  recA Streptococcus mutans UA159

61.329

93.503

0.573
  recA Streptococcus pyogenes NZ131

60.79

92.938

0.565