Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M4S28_RS14965 Genome accession   NZ_CP097293
Coordinates   3355045..3356085 (-) Length   346 a.a.
NCBI ID   WP_249632041.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3350045..3361085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS14940 (M4S28_14940) - 3350073..3351299 (-) 1227 WP_249632038.1 chromosome partitioning protein ParB -
  M4S28_RS14945 (M4S28_14945) - 3351526..3352665 (+) 1140 WP_249632739.1 hypothetical protein -
  M4S28_RS14950 (M4S28_14950) - 3352971..3353738 (+) 768 WP_249632039.1 hypothetical protein -
  M4S28_RS14955 (M4S28_14955) - 3353735..3354178 (+) 444 WP_102482839.1 DUF488 domain-containing protein -
  M4S28_RS14960 (M4S28_14960) - 3354175..3354780 (+) 606 WP_249632040.1 DUF4326 domain-containing protein -
  M4S28_RS14965 (M4S28_14965) recA 3355045..3356085 (-) 1041 WP_249632041.1 recombinase RecA Machinery gene
  M4S28_RS14970 (M4S28_14970) - 3356263..3356757 (-) 495 Protein_2851 ATPase domain-containing protein -
  M4S28_RS14975 (M4S28_14975) pncC 3356897..3357391 (-) 495 WP_029222254.1 nicotinamide-nucleotide amidase -
  M4S28_RS14980 (M4S28_14980) mutS 3357516..3360077 (+) 2562 WP_017092190.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37323.72 Da        Isoelectric Point: 5.1807

>NTDB_id=688330 M4S28_RS14965 WP_249632041.1 3355045..3356085(-) (recA) [Vibrio sp. J383]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIA
AAQKQGKTCAFIDAEHALDPIYAQKLGVDIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNRYGELIDLGVKNKLVDKAGAWYSYKGDKIGQGKANSCKHLEENSHIAEELDA
KLRELLLQPAKQESDVTEDVADKEEF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=688330 M4S28_RS14965 WP_249632041.1 3355045..3356085(-) (recA) [Vibrio sp. J383]
ATGGATGAGAACAAACAGAAAGCATTAGCAGCAGCGCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCTATCATGAA
GCTGGGTGACAACCGAACAATGGATGTTGAAACCATTTCTACAGGTTCACTTTCACTTGATATTGCTTTGGGCGCTGGCG
GTTTGCCAATGGGACGTATAGTAGAAATATTTGGCCCTGAATCATCGGGTAAGACAACGCTTACCCTAGAAGTTATTGCT
GCTGCGCAAAAACAAGGTAAAACTTGTGCTTTTATCGATGCTGAACATGCGCTTGACCCTATTTATGCTCAAAAGCTAGG
TGTAGATATCGATCAGTTACTTGTTTCTCAACCTGATACTGGTGAGCAAGCTCTTGAGATCTGTGATGCGTTGGCTCGTT
CCGGTGCAGTTGATGTAATCGTTGTCGATTCTGTTGCCGCTTTGACCCCGAAAGCAGAGATTGAGGGAGAGATGGGGGAT
TCGCATATGGGCTTGCAAGCGAGACTACTTAGTCAGTCAATGCGTAAAATGACAGGTAATCTTAAAGCTTCAAACTGTAT
GTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACGACTACTGGTGGTAATGCAC
TTAAGTTCTATGCATCAGTTCGTCTGGATATCCGTCGTACAGGTGCTGTTAAAGAAGGTGATGAAGTCGTTGGTAACGAG
ACTCGCATCAAGGTCGTGAAGAACAAGATTGCTGCGCCATTTAAACAGGCTGAGACTCAAATCCTATATGGCAAAGGCTT
CAACCGTTACGGTGAACTGATTGACCTCGGTGTTAAAAATAAACTGGTTGATAAAGCTGGTGCTTGGTATAGCTATAAAG
GTGACAAGATTGGTCAAGGTAAAGCTAATTCTTGTAAGCATCTCGAAGAGAACAGTCACATTGCAGAAGAATTGGATGCA
AAACTTCGTGAGCTTCTTCTTCAGCCAGCTAAACAAGAAAGTGATGTAACCGAAGATGTTGCAGATAAAGAAGAATTTTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.167

100

0.864
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.167

100

0.864
  recA Pseudomonas stutzeri DSM 10701

73.988

100

0.74
  recA Acinetobacter baylyi ADP1

72.754

99.711

0.725
  recA Acinetobacter baumannii D1279779

75.841

94.509

0.717
  recA Glaesserella parasuis strain SC1401

67.816

100

0.682
  recA Neisseria gonorrhoeae MS11

69.325

94.22

0.653
  recA Neisseria gonorrhoeae MS11

69.325

94.22

0.653
  recA Neisseria gonorrhoeae strain FA1090

69.325

94.22

0.653
  recA Ralstonia pseudosolanacearum GMI1000

70.74

89.884

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

92.197

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.775

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

95.665

0.575
  recA Helicobacter pylori strain NCTC11637

60.923

93.931

0.572
  recA Helicobacter pylori 26695

60.615

93.931

0.569
  recA Streptococcus mutans UA159

57.185

98.555

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.883

91.618

0.558
  recA Streptococcus pneumoniae R6

59.752

93.353

0.558
  recA Streptococcus pneumoniae D39

59.752

93.353

0.558
  recA Streptococcus pneumoniae TIGR4

59.752

93.353

0.558
  recA Streptococcus pneumoniae Rx1

59.752

93.353

0.558
  recA Streptococcus mitis NCTC 12261

59.443

93.353

0.555
  recA Streptococcus mitis SK321

59.133

93.353

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.19

92.775

0.549
  recA Streptococcus pyogenes NZ131

58.154

93.931

0.546
  recA Lactococcus lactis subsp. cremoris KW2

56.966

93.353

0.532