Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M3M30_RS08480 Genome accession   NZ_CP097161
Coordinates   1857032..1858075 (-) Length   347 a.a.
NCBI ID   WP_218797208.1    Uniprot ID   -
Organism   Methylococcus capsulatus strain MIR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852032..1863075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M30_RS08460 (M3M30_08460) csrA 1852333..1852527 (-) 195 WP_017364568.1 carbon storage regulator CsrA -
  M3M30_RS08465 (M3M30_08465) - 1852678..1853907 (-) 1230 WP_010959750.1 aspartate kinase -
  M3M30_RS08470 (M3M30_08470) alaS 1853942..1856545 (-) 2604 WP_218800875.1 alanine--tRNA ligase -
  M3M30_RS08475 (M3M30_08475) - 1856565..1856981 (-) 417 WP_010959748.1 regulatory protein RecX -
  M3M30_RS08480 (M3M30_08480) recA 1857032..1858075 (-) 1044 WP_218797208.1 recombinase RecA Machinery gene
  M3M30_RS08485 (M3M30_08485) thpR 1858108..1858680 (-) 573 WP_218800874.1 RNA 2',3'-cyclic phosphodiesterase -
  M3M30_RS08490 (M3M30_08490) - 1858661..1859140 (-) 480 WP_218801332.1 CinA family protein -
  M3M30_RS08495 (M3M30_08495) pmbA 1859979..1861313 (-) 1335 WP_218800873.1 metalloprotease PmbA -
  M3M30_RS08500 (M3M30_08500) tldD 1861306..1862751 (-) 1446 WP_010959742.1 metalloprotease TldD -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37100.33 Da        Isoelectric Point: 5.3109

>NTDB_id=687517 M3M30_RS08480 WP_218797208.1 1857032..1858075(-) (recA) [Methylococcus capsulatus strain MIR]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVIPTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDDLLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRTADFEILYGEGISREGELIDLGVNHDIVQKSGSWYSYGGDRIGQGKDNVRIYLKEHPEVAAAIE
AAVREKALAGFQHAPSAERAALEESGF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=687517 M3M30_RS08480 WP_218797208.1 1857032..1858075(-) (recA) [Methylococcus capsulatus strain MIR]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTTTCCCAGATCGAGAAACAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGATGTCGCGGCGGTCCGGGACATCGACGTGATTCCCACCGGCTCCCTGGCGCTGGACATCGCGCTGGGCTGCG
GCGGTTTGCCGCGTGGTCGCATCGTCGAGATTTACGGGCCGGAGTCCTCGGGCAAGACGACGCTGACTCTGGAGGTCATC
GCCCAGGCGCAGAAGACCGGCGGTGTGGCGGCTTTCGTGGATGCCGAGCATGCCCTGGACCCGGTCTATGCCGAGAAGAT
CGGAGTGAACCTCGACGATCTGCTGGTGTCCCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCGGACATGCTGGTGC
GTTCCGGCGGCGTGGACGTCGTGGTGATCGACTCGGTGGCGGCGTTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCGCACATGGGTCTGCAGGCCAGACTGATGTCGCAGGCCTTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAATCCGGAGACCACCACCGGCGGTAACG
CGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGTTCGGGGGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAAACCCGCGTCAAGGTCGTGAAGAACAAGGTGGCTCCGCCGTTCCGCACCGCCGACTTCGAGATTCTCTATGGCGAGGG
CATCTCGCGCGAGGGCGAACTGATCGACCTCGGCGTGAACCACGACATCGTACAGAAGTCCGGTTCCTGGTACAGCTATG
GCGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCGGAGGTCGCGGCTGCCATCGAG
GCGGCCGTTCGCGAGAAGGCGTTGGCCGGGTTCCAGCACGCACCGTCCGCCGAGCGTGCAGCGCTGGAGGAGAGCGGGTT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.911

100

0.729
  recA Acinetobacter baylyi ADP1

71.221

99.135

0.706
  recA Vibrio cholerae strain A1552

74.695

94.524

0.706
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.524

0.706
  recA Neisseria gonorrhoeae MS11

72.892

95.677

0.697
  recA Neisseria gonorrhoeae MS11

72.892

95.677

0.697
  recA Neisseria gonorrhoeae strain FA1090

72.892

95.677

0.697
  recA Acinetobacter baumannii D1279779

72.644

94.813

0.689
  recA Ralstonia pseudosolanacearum GMI1000

75.806

89.337

0.677
  recA Glaesserella parasuis strain SC1401

71.739

92.795

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.066

95.965

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

67.081

92.795

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

93.66

0.62
  recA Latilactobacillus sakei subsp. sakei 23K

60.819

98.559

0.599
  recA Helicobacter pylori strain NCTC11637

63.497

93.948

0.597
  recA Helicobacter pylori 26695

63.19

93.948

0.594
  recA Streptococcus pneumoniae R6

62.577

93.948

0.588
  recA Streptococcus pneumoniae Rx1

62.577

93.948

0.588
  recA Streptococcus pneumoniae D39

62.577

93.948

0.588
  recA Streptococcus pneumoniae TIGR4

62.577

93.948

0.588
  recA Streptococcus pyogenes NZ131

62.195

94.524

0.588
  recA Streptococcus mitis SK321

62.654

93.372

0.585
  recA Streptococcus mitis NCTC 12261

62.037

93.372

0.579
  recA Streptococcus mutans UA159

61.656

93.948

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.819

95.389

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.494

93.372

0.565