Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M1R55_RS06065 Genome accession   NZ_CP097149
Coordinates   1247660..1248742 (-) Length   360 a.a.
NCBI ID   WP_249393799.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1242660..1253742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS06040 (M1R55_06040) - 1243665..1243916 (+) 252 WP_249393794.1 hypothetical protein -
  M1R55_RS06045 (M1R55_06045) - 1243913..1244575 (+) 663 WP_249393795.1 phosphoribosylanthranilate isomerase -
  M1R55_RS06050 (M1R55_06050) - 1244748..1245635 (-) 888 WP_249393796.1 metalloenzyme domain protein -
  M1R55_RS06055 (M1R55_06055) - 1245814..1246749 (+) 936 WP_249393797.1 biotin--[acetyl-CoA-carboxylase] ligase -
  M1R55_RS06060 (M1R55_06060) - 1246812..1247402 (+) 591 WP_249393798.1 biotin transporter BioY -
  M1R55_RS06065 (M1R55_06065) recA 1247660..1248742 (-) 1083 WP_249393799.1 recombinase RecA Machinery gene
  M1R55_RS06070 (M1R55_06070) thpR 1248809..1249528 (-) 720 WP_249393800.1 RNA 2',3'-cyclic phosphodiesterase -
  M1R55_RS06075 (M1R55_06075) - 1249525..1250781 (-) 1257 WP_249393801.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  M1R55_RS06080 (M1R55_06080) - 1251088..1252179 (+) 1092 WP_249393802.1 hypothetical protein -
  M1R55_RS06085 (M1R55_06085) - 1252253..1252960 (+) 708 WP_249393803.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38089.81 Da        Isoelectric Point: 5.9809

>NTDB_id=687480 M1R55_RS06065 WP_249393799.1 1247660..1248742(-) (recA) [Deinococcus sp. QL22]
MSKDSNKDTVLHLPNDAKERAKAIENAMTQIEKTFGKGSIMKLGAETKLDIQTISTGSLSLDLALGVGGIPRGRVTEIYG
PESGGKTTLALSILAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSV
AALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYSSVRLDVR
KIGQPIKVGNDAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQVADLVGLAADMDIIKKAGSFYSYGEERIGQGKEKA
IAYISERPEMEEEIRARVMAAIKNGGVSAPTVATVAAVAE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=687480 M1R55_RS06065 WP_249393799.1 1247660..1248742(-) (recA) [Deinococcus sp. QL22]
ATGAGCAAGGACAGCAATAAAGACACCGTTTTGCACCTCCCCAACGACGCCAAAGAGCGCGCCAAGGCCATCGAAAATGC
CATGACCCAGATCGAGAAAACGTTTGGCAAGGGCAGCATCATGAAGCTGGGCGCGGAAACCAAGCTGGACATCCAGACCA
TCAGCACGGGCAGCCTGAGCCTTGACCTGGCGCTCGGCGTGGGCGGGATTCCCCGTGGCCGCGTGACCGAAATCTACGGC
CCCGAGTCGGGCGGCAAGACCACGCTGGCCCTCAGCATCCTTGCTCAGGCCCAGAAAGCGGGCGGCACCTGCGCCTTCAT
CGACGCCGAGCACGCGCTTGACCCCGTGTACGCCCGTGCGCTGGGCGTGAACACCGACGAACTGCTGGTGTCTCAGCCCG
ACAACGGCGAGCAGGCGCTGGAAATCATGGAACTGCTGGTTCGCAGCGGCGCCATTGACGTGGTCGTCGTGGATTCCGTG
GCCGCCCTGACGCCCCGCGCCGAAATTGAGGGCGACATGGGCGACAGCCTGCCCGGTTTGCAGGCCCGCCTGATGTCGCA
GGCTCTCCGCAAACTAACCGCGATTCTGAGCAAGACCGGAACCGCCGCCATTTTCATCAACCAGGTTCGCGAAAAGATCG
GCGTGATGTACGGCAACCCCGAAACCACCACCGGGGGCCGCGCCCTGAAGTTCTATTCCTCGGTGCGCCTGGACGTGCGT
AAGATTGGCCAGCCCATCAAGGTCGGCAACGACGCCGTGGCCAACACGGTCAAGATCAAGACCGTGAAGAACAAGGTCGC
TGCGCCCTTCAAGGAAGTGGAATTGGCCCTCGTGTACGGCAAGGGCTTTGACCAGGTGGCCGATCTGGTGGGCCTCGCTG
CCGACATGGACATCATCAAGAAGGCGGGCAGCTTCTATTCCTACGGCGAGGAGCGCATCGGGCAGGGCAAGGAAAAAGCC
ATCGCCTACATCTCCGAGCGCCCCGAAATGGAAGAAGAAATCCGCGCCCGCGTGATGGCCGCCATCAAGAACGGTGGCGT
CAGTGCGCCGACGGTGGCGACTGTCGCTGCCGTAGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

91.014

95.833

0.872
  recA Streptococcus mitis SK321

59.829

97.5

0.583
  recA Glaesserella parasuis strain SC1401

62.13

93.889

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.261

92.5

0.567
  recA Streptococcus pneumoniae Rx1

62.848

89.722

0.564
  recA Streptococcus pneumoniae D39

62.848

89.722

0.564
  recA Streptococcus pneumoniae R6

62.848

89.722

0.564
  recA Streptococcus pneumoniae TIGR4

62.848

89.722

0.564
  recA Streptococcus mitis NCTC 12261

62.539

89.722

0.561
  recA Acinetobacter baumannii D1279779

60.479

92.778

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.3

89.722

0.55
  recA Vibrio cholerae strain A1552

60.245

90.833

0.547
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.245

90.833

0.547
  recA Streptococcus mutans UA159

60.991

89.722

0.547
  recA Acinetobacter baylyi ADP1

61.83

88.056

0.544
  recA Streptococcus pyogenes NZ131

60.681

89.722

0.544
  recA Neisseria gonorrhoeae MS11

60

90.278

0.542
  recA Neisseria gonorrhoeae MS11

60

90.278

0.542
  recA Neisseria gonorrhoeae strain FA1090

60

90.278

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.576

91.667

0.528
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.177

87.778

0.519
  recA Ralstonia pseudosolanacearum GMI1000

60.714

85.556

0.519
  recA Lactococcus lactis subsp. cremoris KW2

57.055

90.556

0.517
  recA Pseudomonas stutzeri DSM 10701

55.891

91.944

0.514
  recA Helicobacter pylori 26695

56.442

90.556

0.511
  recA Helicobacter pylori strain NCTC11637

56.442

90.556

0.511