Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M3M55_RS11435 Genome accession   NZ_CP097128
Coordinates   2407515..2408627 (+) Length   370 a.a.
NCBI ID   WP_249009634.1    Uniprot ID   -
Organism   Conexibacter sp. DBS9H8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2402515..2413627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M55_RS11425 - 2405143..2406015 (+) 873 WP_249009632.1 helix-turn-helix transcriptional regulator -
  M3M55_RS11430 - 2406027..2407352 (+) 1326 WP_249009633.1 competence/damage-inducible protein A -
  M3M55_RS11435 recA 2407515..2408627 (+) 1113 WP_249009634.1 recombinase RecA Machinery gene
  M3M55_RS11440 - 2408684..2409145 (+) 462 WP_249009635.1 regulatory protein RecX -
  M3M55_RS11445 miaB 2409170..2410495 (+) 1326 WP_256469010.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  M3M55_RS11450 - 2410470..2411582 (+) 1113 WP_249009637.1 PAS domain-containing protein -
  M3M55_RS11455 - 2411653..2412654 (+) 1002 WP_249009638.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39362.89 Da        Isoelectric Point: 5.0573

>NTDB_id=687386 M3M55_RS11435 WP_249009634.1 2407515..2408627(+) (recA) [Conexibacter sp. DBS9H8]
MSVDRAGKVGGGGDPKSDAKRQAALQGALSQIERQFGKGTVMRMGDPGARVAVEAIPTGALSLDIALGIGGVPRGRIIEI
FGPESSGKTTLVYHIIAEAQKLGGVCAFVDAEHAMDPLYAQQIGVDIDELLVSQPDYGEQALEVVDMLIRSGAVDVIAVD
SVAALTPRAELEGQMGDQTVGVQARMMSQAMRKLTGNLNRTQTLCVFTNQIREKVGVMFGSPETQPGGRALKFYSSQRLD
IRRIETLKDGTEAVGNRVRVKVVKNKVAAPFKQAEFDIEFGKGISTSGCLIDFGIEHDVITKSGSFFSYGDERIGQGRAN
AKAFLDEHEDIAKEIEAKIYAKLGIGQDLVVPIDREVSLAAVADGEAAAA

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=687386 M3M55_RS11435 WP_249009634.1 2407515..2408627(+) (recA) [Conexibacter sp. DBS9H8]
ATGAGTGTGGACAGAGCCGGTAAGGTCGGCGGCGGTGGGGACCCCAAGTCCGACGCCAAGCGCCAAGCGGCCCTTCAGGG
TGCCCTGAGCCAGATCGAACGACAGTTCGGCAAAGGCACCGTGATGCGGATGGGCGACCCAGGGGCGCGCGTTGCGGTCG
AGGCAATCCCCACCGGGGCGTTGTCGCTCGATATCGCGCTCGGCATCGGCGGGGTCCCCCGCGGCCGGATCATCGAGATC
TTCGGCCCGGAGTCGTCGGGCAAGACGACGCTCGTCTACCACATCATCGCCGAGGCACAGAAACTCGGAGGGGTATGCGC
CTTCGTCGACGCCGAGCACGCAATGGATCCGCTGTACGCCCAGCAGATCGGCGTCGACATCGATGAGCTGCTCGTCTCCC
AGCCCGATTACGGCGAGCAGGCGCTCGAGGTCGTCGACATGCTCATCCGCTCCGGCGCCGTGGATGTGATCGCCGTCGAC
TCGGTCGCCGCACTCACCCCCCGCGCTGAGCTTGAGGGGCAGATGGGCGACCAGACCGTCGGCGTTCAGGCCCGGATGAT
GTCCCAGGCGATGCGCAAGCTGACGGGCAACCTCAACCGGACCCAGACGCTGTGCGTGTTCACGAACCAGATTCGGGAGA
AGGTCGGGGTGATGTTCGGCTCGCCCGAGACCCAGCCGGGCGGTCGGGCGCTGAAGTTCTACTCCTCCCAGCGCCTTGAC
ATCCGCCGGATCGAGACGCTCAAGGATGGCACCGAGGCCGTCGGCAACCGGGTACGGGTCAAGGTCGTCAAGAACAAGGT
CGCCGCCCCGTTCAAGCAGGCCGAATTCGACATCGAGTTCGGGAAGGGGATCTCCACCTCCGGGTGTCTGATCGACTTCG
GCATCGAACACGACGTGATCACCAAGTCCGGCTCGTTCTTCTCCTACGGTGATGAGCGGATCGGCCAGGGGCGGGCGAAC
GCGAAGGCGTTCCTCGACGAGCATGAGGACATCGCCAAAGAGATCGAGGCGAAGATCTACGCCAAGCTCGGCATCGGCCA
AGACCTCGTCGTCCCGATCGACCGTGAGGTTTCCCTCGCCGCCGTCGCCGATGGGGAGGCGGCGGCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

59.884

92.973

0.557
  recA Vibrio cholerae strain A1552

62.577

88.108

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.577

88.108

0.551
  recA Pseudomonas stutzeri DSM 10701

62.577

88.108

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

61.027

89.459

0.546
  recA Acinetobacter baumannii D1279779

61.35

88.108

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

88.919

0.538
  recA Acinetobacter baylyi ADP1

60.429

88.108

0.532
  recA Helicobacter pylori strain NCTC11637

57.647

91.892

0.53
  recA Helicobacter pylori 26695

57.353

91.892

0.527
  recA Neisseria gonorrhoeae MS11

61.587

85.135

0.524
  recA Neisseria gonorrhoeae MS11

61.587

85.135

0.524
  recA Neisseria gonorrhoeae strain FA1090

61.587

85.135

0.524
  recA Streptococcus pneumoniae R6

57.704

89.459

0.516
  recA Streptococcus pneumoniae TIGR4

57.704

89.459

0.516
  recA Streptococcus pneumoniae Rx1

57.704

89.459

0.516
  recA Streptococcus pneumoniae D39

57.704

89.459

0.516
  recA Ralstonia pseudosolanacearum GMI1000

60.828

84.865

0.516
  recA Lactococcus lactis subsp. cremoris KW2

56.38

91.081

0.514
  recA Glaesserella parasuis strain SC1401

57.229

89.73

0.514
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.057

90

0.514
  recA Streptococcus pyogenes NZ131

57.273

89.189

0.511
  recA Streptococcus mitis NCTC 12261

56.627

89.73

0.508
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.287

90.27

0.508
  recA Streptococcus mitis SK321

56.325

89.73

0.505
  recA Streptococcus mutans UA159

55.758

89.189

0.497