Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M3M37_RS06605 Genome accession   NZ_CP097121
Coordinates   1311813..1312928 (-) Length   371 a.a.
NCBI ID   WP_252795021.1    Uniprot ID   -
Organism   Fructilactobacillus carniphilus strain KI4_A6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1306813..1317928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M37_RS06575 (M3M37_06575) menB 1307079..1307900 (-) 822 WP_252795015.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  M3M37_RS06580 (M3M37_06580) - 1307960..1308331 (+) 372 WP_252795016.1 PaaI family thioesterase -
  M3M37_RS06585 (M3M37_06585) - 1308391..1308828 (-) 438 WP_252795017.1 hypothetical protein -
  M3M37_RS06590 (M3M37_06590) - 1308841..1309497 (-) 657 WP_252795018.1 energy-coupling factor transporter transmembrane component T family protein -
  M3M37_RS06595 (M3M37_06595) - 1309497..1310900 (-) 1404 WP_252795019.1 ABC transporter ATP-binding protein -
  M3M37_RS06600 (M3M37_06600) - 1311224..1311766 (+) 543 WP_252795020.1 biotin transporter BioY -
  M3M37_RS06605 (M3M37_06605) recA 1311813..1312928 (-) 1116 WP_252795021.1 recombinase RecA Machinery gene
  M3M37_RS06610 (M3M37_06610) - 1313164..1314609 (+) 1446 WP_252795022.1 APC family permease -
  M3M37_RS06615 (M3M37_06615) - 1314613..1315320 (+) 708 WP_252795023.1 AzlC family ABC transporter permease -
  M3M37_RS06620 (M3M37_06620) - 1315307..1315633 (+) 327 WP_252795024.1 AzlD domain-containing protein -
  M3M37_RS06625 (M3M37_06625) - 1315730..1316275 (+) 546 WP_252795025.1 hypothetical protein -
  M3M37_RS06630 (M3M37_06630) - 1316433..1316612 (-) 180 WP_252795026.1 hypothetical protein -
  M3M37_RS06635 (M3M37_06635) - 1316625..1317149 (-) 525 WP_252795027.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39528.90 Da        Isoelectric Point: 5.2218

>NTDB_id=687355 M3M37_RS06605 WP_252795021.1 1311813..1312928(-) (recA) [Fructilactobacillus carniphilus strain KI4_A6]
MATNSKKSAQDARQAELDKALKQIKKEFGTGAIMRMGETPNSNVEAISTGILSLDIALGIGGFPRGRVVEIFGAESSGKT
TIALQAVAELQKNGGTAAYIDAENAMDPEYAKALGVNIDDLLLSQPGTGEEGLQIADALIGSGAIDLVVVDSVAALVPKS
EIEGDIGDSHVGLQARLMSQALRKLTANINKTKTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLRVSGSKQSKE
GQEVVGKETKIKVAKNKVAPPFKTVDTLMSFGHGIEPVADMVNLAVDKDIINKSGSWYSYGEERLGQGLNKTVANLKEKP
ELVDELTHKVRVAYGIEKEDPEAEKDAVKANAKETATTNTSTKSEETDLDV

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=687355 M3M37_RS06605 WP_252795021.1 1311813..1312928(-) (recA) [Fructilactobacillus carniphilus strain KI4_A6]
ATGGCCACAAATTCAAAAAAGAGCGCGCAAGATGCTCGTCAAGCTGAACTTGACAAAGCTTTAAAACAAATCAAAAAAGA
ATTCGGAACTGGAGCCATCATGCGGATGGGTGAAACCCCTAATTCTAACGTTGAGGCCATTTCCACGGGGATTCTCTCCC
TGGATATTGCCTTAGGAATTGGTGGGTTCCCTCGCGGTCGGGTCGTGGAAATTTTTGGAGCTGAATCTTCCGGAAAAACC
ACAATTGCCCTGCAGGCCGTGGCCGAATTGCAAAAAAACGGTGGTACTGCTGCCTACATTGATGCCGAAAATGCGATGGA
TCCGGAGTACGCCAAGGCCCTCGGAGTTAACATCGATGACTTATTACTATCCCAGCCTGGAACCGGTGAGGAAGGTCTGC
AAATTGCAGACGCCCTAATTGGTTCTGGAGCCATCGACCTCGTAGTGGTAGACTCCGTGGCTGCGTTAGTCCCGAAATCC
GAAATTGAAGGTGACATCGGTGATTCCCACGTGGGACTCCAAGCCCGGTTAATGTCACAGGCTTTGCGGAAATTAACCGC
CAATATCAATAAGACCAAAACCGTCGTGATTTTCATCAACCAACTTCGAGAAAAAGTCGGGGTCATGTTTGGAAATCCGG
AAACCACTCCCGGTGGTCGGGCTCTGAAGTTCTACTCAAGTGTTCGATTGCGGGTAAGCGGTAGTAAGCAATCAAAGGAA
GGCCAAGAAGTCGTGGGGAAAGAAACCAAGATCAAAGTGGCTAAGAATAAGGTGGCACCACCATTCAAGACCGTTGACAC
GTTGATGAGTTTTGGGCACGGAATCGAACCGGTTGCCGACATGGTGAACCTGGCCGTTGATAAAGATATCATTAACAAGT
CCGGGTCCTGGTACTCCTATGGAGAAGAACGACTCGGTCAGGGATTGAACAAGACCGTGGCTAACCTGAAGGAAAAACCA
GAACTTGTGGATGAATTAACCCACAAGGTCCGGGTCGCTTACGGGATTGAAAAAGAAGACCCAGAAGCAGAAAAAGATGC
CGTAAAAGCTAATGCTAAAGAAACAGCTACAACCAACACTTCAACTAAATCAGAAGAAACCGATTTAGACGTCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

60.989

98.113

0.598
  recA Streptococcus pneumoniae TIGR4

59.621

99.461

0.593
  recA Streptococcus pneumoniae Rx1

59.621

99.461

0.593
  recA Streptococcus pneumoniae D39

59.621

99.461

0.593
  recA Streptococcus pneumoniae R6

59.621

99.461

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

66.768

88.41

0.59
  recA Lactococcus lactis subsp. cremoris KW2

62.536

93.531

0.585
  recA Streptococcus mitis NCTC 12261

61.782

93.801

0.58
  recA Streptococcus mitis SK321

62.573

92.183

0.577
  recA Streptococcus pyogenes NZ131

63.526

88.679

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

87.601

0.55
  recA Neisseria gonorrhoeae strain FA1090

60

87.601

0.526
  recA Neisseria gonorrhoeae MS11

60

87.601

0.526
  recA Neisseria gonorrhoeae MS11

60

87.601

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.317

86.792

0.515
  recA Glaesserella parasuis strain SC1401

56.176

91.644

0.515
  recA Acinetobacter baylyi ADP1

55.952

90.566

0.507
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.734

91.105

0.499
  recA Vibrio cholerae strain A1552

57.994

85.984

0.499
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.994

85.984

0.499
  recA Acinetobacter baumannii D1279779

58.413

84.906

0.496
  recA Ralstonia pseudosolanacearum GMI1000

58.466

84.367

0.493
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.372

91.914

0.491
  recA Pseudomonas stutzeri DSM 10701

56.508

84.906

0.48
  recA Helicobacter pylori strain NCTC11637

53.049

88.41

0.469
  recA Helicobacter pylori 26695

52.744

88.41

0.466