Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M3M39_RS01615 Genome accession   NZ_CP097118
Coordinates   338598..339716 (-) Length   372 a.a.
NCBI ID   WP_252797492.1    Uniprot ID   -
Organism   Fructilactobacillus hinvesii strain KI11_C11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 333598..344716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M39_RS01585 (M3M39_01585) menB 333863..334684 (-) 822 WP_252797486.1 1,4-dihydroxy-2-naphthoyl-CoA synthase -
  M3M39_RS01590 (M3M39_01590) - 334746..335117 (+) 372 WP_252797487.1 PaaI family thioesterase -
  M3M39_RS01595 (M3M39_01595) - 335178..335615 (-) 438 WP_252797488.1 hypothetical protein -
  M3M39_RS01600 (M3M39_01600) - 335631..336287 (-) 657 WP_252797489.1 energy-coupling factor transporter transmembrane component T family protein -
  M3M39_RS01605 (M3M39_01605) - 336287..337690 (-) 1404 WP_252797490.1 ABC transporter ATP-binding protein -
  M3M39_RS01610 (M3M39_01610) - 338011..338556 (+) 546 WP_252797491.1 biotin transporter BioY -
  M3M39_RS01615 (M3M39_01615) recA 338598..339716 (-) 1119 WP_252797492.1 recombinase RecA Machinery gene
  M3M39_RS01620 (M3M39_01620) - 339956..341401 (+) 1446 WP_252797493.1 APC family permease -
  M3M39_RS01625 (M3M39_01625) - 341405..342112 (+) 708 WP_252797494.1 AzlC family ABC transporter permease -
  M3M39_RS01630 (M3M39_01630) - 342099..342425 (+) 327 WP_252797495.1 AzlD domain-containing protein -
  M3M39_RS01635 (M3M39_01635) - 342490..342669 (-) 180 WP_252797496.1 hypothetical protein -
  M3M39_RS01640 (M3M39_01640) - 342682..343206 (-) 525 WP_252797497.1 GNAT family N-acetyltransferase -
  M3M39_RS01645 (M3M39_01645) - 343285..344466 (-) 1182 WP_252797498.1 thiolase family protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39624.95 Da        Isoelectric Point: 4.9922

>NTDB_id=687302 M3M39_RS01615 WP_252797492.1 338598..339716(-) (recA) [Fructilactobacillus hinvesii strain KI11_C11]
MATNSKKSAQDARQAELDKALKQIKKEFGTGAIMRMGESPSSNVEAISTGILSLDIALGIGGFPRGRVVEIFGAESSGKT
TIALQAVAELQKNGGTAAYIDAENAMDPEYAKALGVNIDDLLLSQPGTGEEGLQIADALIGSGAIDLIVVDSVAALVPKS
EIEGDIGDSHVGLQARLMSQALRKLTANINKTKTVVIFINQLREKVGVMFGNPETTPGGRALKFYSSIRLRVSGSKQSKD
GQEIVGKETKIKVAKNKVAPPFKTVDTLMSFGHGIEPVADMVNLAVEKDIINKSGSWYSYGEERLGQGLNKTVANLKEKP
ELVDELTHKVRVAYGIEKEEPQAATDAQAENEKNTTPTTDDTAKPSETDLDV

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=687302 M3M39_RS01615 WP_252797492.1 338598..339716(-) (recA) [Fructilactobacillus hinvesii strain KI11_C11]
ATGGCCACAAATTCAAAAAAGAGCGCACAAGATGCTCGTCAAGCCGAACTTGACAAAGCTTTAAAGCAAATTAAAAAAGA
ATTCGGAACTGGTGCCATCATGCGGATGGGTGAATCACCAAGCTCCAACGTTGAAGCCATTTCCACGGGGATTTTATCCT
TAGACATTGCCCTTGGAATTGGTGGTTTCCCCCGCGGCCGGGTGGTTGAAATCTTTGGAGCAGAATCGTCTGGGAAAACG
ACGATTGCCCTCCAGGCCGTCGCCGAATTACAGAAAAACGGCGGGACCGCGGCTTATATTGATGCCGAAAATGCGATGGA
TCCCGAGTACGCAAAGGCACTGGGCGTTAACATCGATGACTTGCTTCTTTCCCAACCGGGAACTGGTGAAGAAGGACTGC
AAATTGCGGATGCCCTAATTGGTTCCGGTGCAATTGACCTAATCGTAGTTGATTCCGTGGCGGCGCTTGTTCCAAAGTCT
GAAATCGAAGGTGATATTGGCGATTCCCACGTGGGACTACAAGCGCGTCTAATGTCTCAAGCCCTCCGGAAACTGACGGC
CAACATTAACAAAACCAAAACCGTAGTGATTTTCATTAACCAACTGCGAGAAAAAGTGGGAGTAATGTTTGGTAATCCCG
AAACCACTCCTGGTGGTCGGGCTTTGAAGTTCTACTCCAGCATTCGGCTACGGGTCAGCGGAAGTAAGCAGTCCAAAGAT
GGTCAAGAAATCGTCGGAAAAGAGACTAAGATTAAAGTGGCCAAAAACAAGGTTGCTCCGCCCTTTAAGACGGTTGACAC
GTTGATGAGTTTTGGTCACGGAATTGAACCAGTCGCTGACATGGTAAACCTGGCCGTAGAAAAAGACATCATTAACAAGT
CTGGATCCTGGTATTCCTATGGTGAAGAACGCTTAGGCCAAGGATTAAATAAGACCGTTGCAAATCTAAAAGAAAAACCA
GAACTAGTGGATGAATTAACCCACAAGGTTCGGGTGGCTTACGGAATTGAAAAAGAAGAACCCCAAGCCGCAACAGATGC
ACAAGCGGAAAATGAAAAAAACACAACCCCAACTACGGACGACACTGCTAAACCGAGTGAAACTGATTTAGACGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

66.768

88.172

0.589
  recA Streptococcus mutans UA159

60.221

97.312

0.586
  recA Streptococcus mitis SK321

59.504

97.581

0.581
  recA Lactococcus lactis subsp. cremoris KW2

61.96

93.28

0.578
  recA Streptococcus pneumoniae Rx1

61.383

93.28

0.573
  recA Streptococcus pneumoniae D39

61.383

93.28

0.573
  recA Streptococcus pneumoniae R6

61.383

93.28

0.573
  recA Streptococcus pneumoniae TIGR4

61.383

93.28

0.573
  recA Streptococcus mitis NCTC 12261

63.415

88.172

0.559
  recA Streptococcus pyogenes NZ131

62.614

88.441

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

62.154

87.366

0.543
  recA Neisseria gonorrhoeae strain FA1090

58.383

89.785

0.524
  recA Neisseria gonorrhoeae MS11

58.383

89.785

0.524
  recA Neisseria gonorrhoeae MS11

58.383

89.785

0.524
  recA Glaesserella parasuis strain SC1401

56.471

91.398

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.385

86.559

0.505
  recA Acinetobacter baylyi ADP1

57.632

86.29

0.497
  recA Acinetobacter baumannii D1279779

58.413

84.677

0.495
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.367

85.753

0.492
  recA Vibrio cholerae strain A1552

57.367

85.753

0.492
  recA Ralstonia pseudosolanacearum GMI1000

58.466

84.14

0.492
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.254

90.86

0.484
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.268

88.172

0.478
  recA Pseudomonas stutzeri DSM 10701

55.873

84.677

0.473
  recA Helicobacter pylori strain NCTC11637

52.439

88.172

0.462
  recA Helicobacter pylori 26695

52.134

88.172

0.46