Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M2917_RS12350 Genome accession   NZ_CP097022
Coordinates   2535480..2536523 (-) Length   347 a.a.
NCBI ID   WP_113624652.1    Uniprot ID   -
Organism   Enterococcus faecium strain AT45b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2530480..2541523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2917_RS12340 (M2917_12340) proC 2532617..2533423 (+) 807 WP_002296027.1 pyrroline-5-carboxylate reductase -
  M2917_RS12345 (M2917_12345) rny 2533502..2535058 (-) 1557 WP_002287336.1 ribonuclease Y -
  M2917_RS12350 (M2917_12350) recA 2535480..2536523 (-) 1044 WP_113624652.1 recombinase RecA Machinery gene
  M2917_RS12355 (M2917_12355) cinA 2536632..2537873 (-) 1242 WP_002296026.1 competence/damage-inducible protein A Machinery gene
  M2917_RS12360 (M2917_12360) pgsA 2538113..2538691 (-) 579 WP_002296025.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2917_RS12365 (M2917_12365) - 2538900..2539823 (-) 924 WP_002287423.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37269.71 Da        Isoelectric Point: 4.9715

>NTDB_id=686311 M2917_RS12350 WP_113624652.1 2535480..2536523(-) (recA) [Enterococcus faecium strain AT45b]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVAVPEDEKGQEELPLL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=686311 M2917_RS12350 WP_113624652.1 2535480..2536523(-) (recA) [Enterococcus faecium strain AT45b]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCACTGAAAAAAATTGAAAAGAGCTATGGTAAAGGCTCTATTATGAA
ATTGGGCGAAAAAATCGACCAACAAATCTCTACAATTCCAAGTGGCTCTCTTGCGTTAGATGTCGCTTTAGGTGTCGGCG
GTTACCCCCGTGGACGTATCATCGAAGTATATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCACTACACGCTATTGCA
GAAGTACAAAAAAATGGCGGAACGGCCGCTTTCATTGATGCTGAGCATGCGTTAGATCCGCAATATGCACAAAAATTAGG
TGTGAATATCGATGAACTACTTCTTTCACAGCCTGACACAGGAGAACAAGGTCTAGAGATCGCTGATGCTTTAGTATCAA
GTGGGGCTGTAGATATCGTAGTAGTCGATTCAGTTGCTGCTTTAGTTCCACGAGCAGAAATCGACGGCGAAATGGGTGAC
TCACATGTCGGGTTACAAGCACGTTTGATGTCTCAAGCATTGCGTAAACTCTCTGGTTCGATCAACAAAACAAAAACAAT
CGCTATTTTCATCAACCAAATCCGTGAAAAAGTAGGCGTGATGTTTGGGAATCCAGAAATCACTCCTGGAGGACGCGCAT
TGAAATTCTACGCAACGATCCGTTTGGAAGTACGTCGTGCAGAACAATTGAAACAAGGTACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAACAAAGTAGCACCTCCTTTCAAAATCGCTGAAGTAGATGTCATGTATGGTTTAGGGAT
CTCACAAGAAGGAGAACTTCTAGACATGGCAGTAGAAAAAGACATTGTTGATAAAAGCGGTGCTTGGTATTCTTATAAAG
AAGATCGGATTGGTCAAGGACGGGAAAACGCTAAAATCTATATGGCTAATCATCCTGAAATGATGGCAGAAGTTTCTGCT
CTAGTTAGAGCAGCTTATGGTATTGGTGAAGAAGTCGCTGTCCCAGAAGATGAAAAAGGACAAGAAGAATTGCCTTTACT
TTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.009

98.847

0.781
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.66

0.744
  recA Streptococcus pneumoniae R6

69.653

99.712

0.695
  recA Streptococcus pneumoniae TIGR4

69.653

99.712

0.695
  recA Streptococcus pneumoniae Rx1

69.653

99.712

0.695
  recA Streptococcus pneumoniae D39

69.653

99.712

0.695
  recA Streptococcus mitis SK321

71.131

96.83

0.689
  recA Streptococcus mitis NCTC 12261

70.833

96.83

0.686
  recA Streptococcus pyogenes NZ131

69.789

95.389

0.666
  recA Streptococcus mutans UA159

66.571

100

0.666
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.813

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.35

98.847

0.597
  recA Neisseria gonorrhoeae strain FA1090

62.614

94.813

0.594
  recA Neisseria gonorrhoeae MS11

62.614

94.813

0.594
  recA Neisseria gonorrhoeae MS11

62.614

94.813

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.66

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

93.084

0.573
  recA Acinetobacter baumannii D1279779

61.61

93.084

0.573
  recA Vibrio cholerae strain A1552

61.61

93.084

0.573
  recA Helicobacter pylori 26695

58.065

98.271

0.571
  recA Helicobacter pylori strain NCTC11637

58.065

98.271

0.571
  recA Acinetobacter baylyi ADP1

61.3

93.084

0.571
  recA Ralstonia pseudosolanacearum GMI1000

62.939

90.202

0.568
  recA Pseudomonas stutzeri DSM 10701

60.494

93.372

0.565
  recA Glaesserella parasuis strain SC1401

60.748

92.507

0.562