Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCX79_RS04155 Genome accession   NZ_AP017935
Coordinates   795578..796735 (+) Length   385 a.a.
NCBI ID   WP_072613262.1    Uniprot ID   A0A2N9K9H6
Organism   Leuconostoc suionicum strain LT-38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 790578..801735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX79_RS04135 (LEUCM_00784) - 791418..792683 (+) 1266 WP_072613258.1 pitrilysin family protein -
  CCX79_RS04140 (LEUCM_00785) - 792685..793956 (+) 1272 WP_072613259.1 pitrilysin family protein -
  CCX79_RS04145 (LEUCM_00786) - 793971..794846 (+) 876 WP_072613260.1 RodZ domain-containing protein -
  CCX79_RS04150 (LEUCM_00788) pgsA 794857..795438 (+) 582 WP_072613261.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CCX79_RS04155 (LEUCM_00789) recA 795578..796735 (+) 1158 WP_072613262.1 recombinase RecA Machinery gene
  CCX79_RS04160 (LEUCM_00790) - 796817..797509 (+) 693 WP_072613263.1 response regulator transcription factor -
  CCX79_RS04165 (LEUCM_00791) - 797760..798674 (+) 915 WP_072613264.1 phosphate ABC transporter substrate-binding protein -
  CCX79_RS04170 (LEUCM_00792) - 798756..800096 (+) 1341 WP_072613265.1 ATP-binding protein -
  CCX79_RS04175 (LEUCM_00793) - 800260..801141 (+) 882 WP_072613266.1 phosphate ABC transporter substrate-binding protein PstS family protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41311.69 Da        Isoelectric Point: 4.8063

>NTDB_id=68628 CCX79_RS04155 WP_072613262.1 795578..796735(+) (recA) [Leuconostoc suionicum strain LT-38]
MVAKKTTKKDDQAKKDGRRAALDEALKKIEKNFGKGSVMTLGDNALTQIETIPSGSVKIDVALGVGGYPKGRIIEVYGPE
SSGKTTIALHAVAEVQKQGGTAAYIDAENALDVKYAEALGVKKDELLLSQPDTGEQGLEIADALVQSGAVDMIVVDSVAA
LVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRS
TQIKDGTDVTGNLTKVKIVKNKVAPPFKVAEVDIMYGHGISQTGEILDLAVDQDIIDKAGAWYAYEGERIGQGREKAKDY
LDDPEHTALRQELYVKVRQAYGIDSNANGTAVSNTEAQAEKSDEQINLPDLDTSADDSLTDEPIV

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=68628 CCX79_RS04155 WP_072613262.1 795578..796735(+) (recA) [Leuconostoc suionicum strain LT-38]
ATGGTAGCAAAGAAAACGACTAAAAAAGACGATCAAGCAAAGAAAGATGGTCGTCGAGCCGCGCTAGATGAAGCGCTAAA
GAAAATTGAAAAGAACTTTGGAAAAGGTTCAGTGATGACGTTAGGAGATAACGCGCTAACGCAGATCGAAACGATCCCTT
CTGGTTCTGTTAAAATTGATGTTGCTTTGGGTGTGGGTGGCTATCCCAAGGGACGTATTATTGAAGTATACGGTCCAGAA
TCATCCGGTAAAACAACCATCGCACTTCATGCAGTTGCTGAAGTGCAAAAGCAAGGTGGAACGGCTGCCTATATTGATGC
TGAAAATGCTTTGGATGTTAAATACGCTGAAGCCCTTGGCGTTAAAAAAGACGAATTACTCTTGTCACAACCGGATACAG
GCGAACAGGGATTAGAAATTGCTGATGCTTTGGTACAATCAGGTGCTGTAGACATGATTGTTGTTGACTCAGTTGCTGCA
TTAGTACCTCGTGCAGAAATCGAAGGTGAAATGGGTGATGCGCACGTTGGATTGCAAGCTCGTTTGATGAGTCAAGCACT
ACGTAAGTTAGCGGGAACTTTAAACCGAACGGGAACAATTGCTATTTTCATCAATCAAATTCGTGAAAAAGTCGGCGTAA
TGTTTGGAAACCCAGAAACTACACCCGGTGGTCGTGCACTAAAGTTCTATTCGACAGTACGTTTAGAAGTTAGACGTTCA
ACGCAAATTAAAGACGGTACTGATGTCACCGGTAATTTGACAAAAGTTAAAATTGTTAAAAACAAGGTGGCTCCACCATT
CAAAGTTGCTGAAGTCGATATTATGTATGGGCATGGGATTTCACAAACAGGTGAAATTCTCGATCTTGCTGTTGATCAAG
ATATTATCGATAAAGCAGGTGCATGGTACGCCTACGAAGGTGAGCGAATTGGTCAAGGGCGTGAGAAAGCCAAAGACTAT
TTAGATGATCCTGAGCATACTGCATTGCGACAAGAACTATATGTCAAGGTGCGTCAAGCGTATGGTATTGATTCTAATGC
GAATGGTACTGCCGTTTCAAATACGGAAGCTCAGGCGGAAAAATCTGATGAACAAATTAATTTGCCAGATTTGGATACAT
CAGCAGATGATTCTTTAACAGATGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N9K9H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

73.889

93.506

0.691
  recA Streptococcus mitis SK321

63.733

97.403

0.621
  recA Streptococcus mitis NCTC 12261

63.733

97.403

0.621
  recA Streptococcus mutans UA159

61.78

99.221

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

71.125

85.455

0.608
  recA Streptococcus pyogenes NZ131

67.147

90.13

0.605
  recA Streptococcus pneumoniae R6

63.315

95.584

0.605
  recA Streptococcus pneumoniae TIGR4

63.315

95.584

0.605
  recA Streptococcus pneumoniae D39

63.315

95.584

0.605
  recA Streptococcus pneumoniae Rx1

63.315

95.584

0.605
  recA Lactococcus lactis subsp. cremoris KW2

65.616

90.649

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.538

89.87

0.535
  recA Ralstonia pseudosolanacearum GMI1000

64.127

81.818

0.525
  recA Glaesserella parasuis strain SC1401

54.645

95.065

0.519
  recA Pseudomonas stutzeri DSM 10701

57.514

89.87

0.517
  recA Acinetobacter baumannii D1279779

60.494

84.156

0.509
  recA Acinetobacter baylyi ADP1

59.939

84.935

0.509
  recA Neisseria gonorrhoeae MS11

57.817

88.052

0.509
  recA Neisseria gonorrhoeae MS11

57.817

88.052

0.509
  recA Neisseria gonorrhoeae strain FA1090

57.817

88.052

0.509
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.567

87.532

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

84.156

0.501
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.772

80.779

0.491
  recA Vibrio cholerae strain A1552

60.772

80.779

0.491
  recA Helicobacter pylori strain NCTC11637

57.055

84.675

0.483
  recA Helicobacter pylori 26695

57.055

84.675

0.483

Multiple sequence alignment