Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M2J84_RS18360 Genome accession   NZ_CP096918
Coordinates   3898447..3899559 (+) Length   370 a.a.
NCBI ID   WP_042415972.1    Uniprot ID   A0A014MIU6
Organism   Comamonas aquatica strain NY8661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3893447..3904559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J84_RS18340 (M2J84_18360) - 3894400..3895371 (+) 972 WP_270152741.1 LysR substrate-binding domain-containing protein -
  M2J84_RS18345 (M2J84_18365) - 3895394..3896866 (-) 1473 WP_042415963.1 sensor histidine kinase N-terminal domain-containing protein -
  M2J84_RS18350 (M2J84_18370) - 3896936..3897610 (-) 675 WP_042415966.1 response regulator transcription factor -
  M2J84_RS18355 (M2J84_18375) - 3897803..3898306 (-) 504 WP_270150039.1 MarR family winged helix-turn-helix transcriptional regulator -
  M2J84_RS18360 (M2J84_18380) recA 3898447..3899559 (+) 1113 WP_042415972.1 recombinase RecA Machinery gene
  M2J84_RS18365 (M2J84_18385) recX 3899636..3900097 (+) 462 WP_043378583.1 recombination regulator RecX -
  M2J84_RS18370 (M2J84_18390) - 3900158..3901402 (-) 1245 WP_270150042.1 MgtC/SapB family protein -
  M2J84_RS18375 (M2J84_18395) yddG 3901490..3902416 (-) 927 WP_042415981.1 aromatic amino acid DMT transporter YddG -
  M2J84_RS18380 (M2J84_18400) argC 3902583..3903515 (-) 933 WP_154163114.1 N-acetyl-gamma-glutamyl-phosphate reductase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39180.97 Da        Isoelectric Point: 5.0958

>NTDB_id=685162 M2J84_RS18360 WP_042415972.1 3898447..3899559(+) (recA) [Comamonas aquatica strain NY8661]
MNAIARNTDANSEKAKALAAALAQIEKQFGKGTIMKLGEGEAVEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLNEVLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDNAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMAVEAKLLEKSGAWYAYNGEKIGQGRDNAREFLKE
NPALAVEIENKVRESLGISLIPVAEGEAAAKPAKGKKADKAVADEDGVIG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=685162 M2J84_RS18360 WP_042415972.1 3898447..3899559(+) (recA) [Comamonas aquatica strain NY8661]
ATGAACGCCATCGCCCGCAACACCGACGCCAACAGCGAAAAAGCCAAGGCCCTGGCCGCCGCCCTGGCCCAGATCGAAAA
GCAGTTTGGCAAGGGCACCATCATGAAGCTGGGCGAGGGCGAGGCCGTAGAGGACATCCAGGTCGTGTCCACCGGCTCGC
TGGGCCTGGACGTGGCCCTGGGCGTGGGCGGCCTGCCCCGCGGTCGTGTGATCGAGATTTACGGCCCCGAGTCGTCCGGC
AAGACCACGCTGACCCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTCATCGACGCCGAGCACGC
GCTGGACACCAGCTATGCGCAGAAGCTGGGCGTGAACCTGAACGAGGTGCTGATCAGCCAGCCCGACACCGGCGAGCAGG
CCCTGGAAATCGTCGACAGCCTGGTGCGCTCCGGCGCCGTGGACCTGATCGTCGTCGACTCGGTCGCAGCCCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGCGACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCACCATC
AAGAAGGGCGACAACGCCATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTGTCGCCCCCGTTCAAGACGGC
CGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCCTGGACATGGCCGTGGAAGCCAAGCTGCTGG
AAAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGCCAGGGCCGTGACAACGCCCGCGAGTTCCTGAAGGAA
AACCCCGCGCTGGCCGTGGAAATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCAGCCTGATCCCCGTGGCCGAAGGCGA
AGCCGCCGCCAAGCCCGCCAAGGGCAAGAAGGCCGACAAGGCCGTGGCCGATGAAGACGGCGTGATCGGTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A014MIU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.81

85.135

0.714
  recA Pseudomonas stutzeri DSM 10701

68.696

93.243

0.641
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae MS11

70.909

89.189

0.632
  recA Neisseria gonorrhoeae strain FA1090

70.909

89.189

0.632
  recA Glaesserella parasuis strain SC1401

71.605

87.568

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.962

91.622

0.614
  recA Vibrio cholerae strain A1552

69.018

88.108

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.018

88.108

0.608
  recA Acinetobacter baylyi ADP1

69.018

88.108

0.608
  recA Acinetobacter baumannii D1279779

69.018

88.108

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

88.919

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

88.378

0.576
  recA Helicobacter pylori strain NCTC11637

64.939

88.649

0.576
  recA Helicobacter pylori 26695

64.939

88.649

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

90

0.568
  recA Lactococcus lactis subsp. cremoris KW2

63.444

89.459

0.568
  recA Streptococcus mutans UA159

59.207

95.405

0.565
  recA Streptococcus mitis SK321

59.942

93.784

0.562
  recA Streptococcus pyogenes NZ131

62.614

88.919

0.557
  recA Streptococcus pneumoniae R6

61.631

89.459

0.551
  recA Streptococcus pneumoniae Rx1

61.631

89.459

0.551
  recA Streptococcus pneumoniae D39

61.631

89.459

0.551
  recA Streptococcus pneumoniae TIGR4

61.631

89.459

0.551
  recA Streptococcus mitis NCTC 12261

61.329

89.459

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.909

89.189

0.543