Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUB18_RS02725 Genome accession   NZ_CP096883
Coordinates   664216..665235 (+) Length   339 a.a.
NCBI ID   WP_045754617.1    Uniprot ID   A0A077XV97
Organism   Sphingobacterium sp. PCS056     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 659216..670235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB18_RS02705 (MUB18_02705) - 659226..661358 (-) 2133 WP_248754905.1 S9 family peptidase -
  MUB18_RS02710 (MUB18_02710) - 661526..663157 (+) 1632 WP_248754906.1 S8 family serine peptidase -
  MUB18_RS02715 (MUB18_02715) - 663230..663412 (+) 183 WP_045754615.1 hypothetical protein -
  MUB18_RS02720 (MUB18_02720) nth 663465..664133 (+) 669 WP_045754616.1 endonuclease III -
  MUB18_RS02725 (MUB18_02725) recA 664216..665235 (+) 1020 WP_045754617.1 recombinase RecA Machinery gene
  MUB18_RS02730 (MUB18_02730) - 665311..666084 (+) 774 WP_052627657.1 endonuclease/exonuclease/phosphatase family protein -
  MUB18_RS02735 (MUB18_02735) - 666091..667272 (+) 1182 WP_248754907.1 metallophosphoesterase family protein -
  MUB18_RS02740 (MUB18_02740) pruA 667348..668985 (-) 1638 WP_248754908.1 L-glutamate gamma-semialdehyde dehydrogenase -
  MUB18_RS02745 (MUB18_02745) msrA 669083..669748 (-) 666 WP_248754909.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36465.87 Da        Isoelectric Point: 4.9476

>NTDB_id=684718 MUB18_RS02725 WP_045754617.1 664216..665235(+) (recA) [Sphingobacterium sp. PCS056]
MSNPDKLKALQLTLDKLEKSYGKGAIMKLGDTTVEAIESISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHII
AEAQKTGGIAAFIDAEHAFDKYYAQKLGVDVENLLIAQPDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKAEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RIKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKAGSWFSYGETKLGQGRDAVKNLLHDNPDLADELE
AKIRAEVSGVDPNLVLEEG

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=684718 MUB18_RS02725 WP_045754617.1 664216..665235(+) (recA) [Sphingobacterium sp. PCS056]
ATGAGCAACCCAGATAAATTAAAAGCGTTACAGCTTACATTAGATAAATTAGAAAAATCATATGGCAAAGGTGCCATTAT
GAAATTAGGAGATACTACTGTTGAGGCTATCGAATCTATCTCTACAGGTTCTTTAGGTCTAGATATCGCATTAGGCATCG
GTGGTGTACCTAAAGGACGTATCATTGAAATATATGGTCCTGAATCTTCTGGTAAAACAACCCTAGCGACCCATATCATT
GCTGAAGCTCAAAAGACAGGCGGGATTGCAGCGTTCATCGATGCGGAACATGCTTTTGACAAATATTACGCTCAGAAATT
AGGGGTTGATGTAGAAAATTTATTAATTGCACAACCTGATAATGGGGAGCAGGCTTTAGAAATTGCAGATAACTTAATTC
GTTCTGGAGCTATTGACATTATCGTTATTGACTCGGTAGCTGCTTTAGTACCAAAAGCGGAGATTGAAGGTGAAATGGGT
GATTCAAAAATGGGTCTTCAAGCACGTTTAATGTCTCAAGCTTTACGTAAGTTAACGGGTACCATTTCAAAAACAAACTG
CTGTTGTATTTTTATCAATCAACTTCGTGAAAAAATTGGAGTTATGTTTGGTAATCCTGAAACGACTACTGGTGGTAACG
CATTGAAATTCTATGCATCTGTCCGTTTAGACATTCGCCGTACTTCTCAAATCAAAGATTCTGATGAAGTATCGGGTAAT
CGTATAAAAGTAAAAATTGTTAAGAACAAAGTAGCTCCTCCGTTTCGTATAGCAGAATTTGATATCATGTTTGGAGAAGG
TATTTCTAAAGTTGGTGAAATCATCGATTTAGGTGTTGAATATAATATCATCAAAAAAGCGGGTTCATGGTTTAGCTATG
GCGAAACGAAATTAGGTCAAGGTCGCGATGCTGTAAAAAACCTATTGCATGATAATCCAGATTTAGCAGATGAGTTAGAA
GCTAAGATCAGAGCTGAAGTTTCGGGTGTAGATCCTAACCTCGTTTTAGAAGAAGGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077XV97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

73.414

97.64

0.717
  recA Neisseria gonorrhoeae MS11

66.265

97.935

0.649
  recA Neisseria gonorrhoeae MS11

66.265

97.935

0.649
  recA Neisseria gonorrhoeae strain FA1090

66.265

97.935

0.649
  recA Ralstonia pseudosolanacearum GMI1000

68.671

93.215

0.64
  recA Glaesserella parasuis strain SC1401

65.361

97.935

0.64
  recA Helicobacter pylori 26695

66.258

96.165

0.637
  recA Bacillus subtilis subsp. subtilis str. 168

65.06

97.935

0.637
  recA Helicobacter pylori strain NCTC11637

65.951

96.165

0.634
  recA Acinetobacter baylyi ADP1

66.254

95.28

0.631
  recA Acinetobacter baumannii D1279779

65.635

95.28

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.325

95.28

0.622
  recA Pseudomonas stutzeri DSM 10701

64.706

95.28

0.617
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.813

94.395

0.593
  recA Vibrio cholerae strain A1552

62.813

94.395

0.593
  recA Streptococcus pyogenes NZ131

61.728

95.575

0.59
  recA Streptococcus pneumoniae Rx1

58.876

99.705

0.587
  recA Streptococcus pneumoniae R6

58.876

99.705

0.587
  recA Streptococcus pneumoniae TIGR4

58.876

99.705

0.587
  recA Streptococcus pneumoniae D39

58.876

99.705

0.587
  recA Streptococcus mitis NCTC 12261

59.05

99.41

0.587
  recA Streptococcus mitis SK321

59.517

97.64

0.581
  recA Latilactobacillus sakei subsp. sakei 23K

60.615

95.87

0.581
  recA Lactococcus lactis subsp. cremoris KW2

60.87

94.985

0.578
  recA Streptococcus mutans UA159

58.589

96.165

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

95.575

0.54