Detailed information NTG0068442

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SPYCA_RS09285
• Genome accession: NZ_AP017898
• Coordinates: 1967818..1968897 (-)
• Length: 359 a.a.
• NCBI ID: WP_120219917.1
• Uniprot ID: A0A2Z5UM84
• Organism: Sphingopyxis sp. FD7
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1962818..1973897

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPYCA_RS09270 (SPYCA_1854)	-	1965357..1965941 (-)	585	WP_120219914.1	hypothetical protein	-
SPYCA_RS09275 (SPYCA_1855)	-	1965931..1966557 (-)	627	WP_120219915.1	glutathione S-transferase family protein	-
SPYCA_RS09280 (SPYCA_1856)	speB	1966576..1967391 (-)	816	WP_120219916.1	agmatinase	-
SPYCA_RS09285 (SPYCA_1857)	recA	1967818..1968897 (-)	1080	WP_120219917.1	recombinase RecA	Machinery gene
SPYCA_RS09290 (SPYCA_1858)	-	1969001..1969348 (-)	348	WP_120219918.1	response regulator	-
SPYCA_RS09295 (SPYCA_1859)	-	1969341..1971725 (-)	2385	WP_120222242.1	ATP-binding protein	-
SPYCA_RS09300 (SPYCA_1860)	-	1971815..1973875 (-)	2061	WP_172595025.1	M13-type metalloendopeptidase	-

Sequence

Protein

• Length: 359 a.a.
• Molecular weight: 38376.85 Da
• Isoelectric Point: 5.0540

>NTDB_id=68442 SPYCA_RS09285 WP_120219917.1 1967818..1968897(-) (recA) [Sphingopyxis sp. FD7]
MAGQLSLVESGKSVNGTDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKMGGTAAFVDAEHALDPVYARKLGVDIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKNGDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDIGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLTENPELRERLEAAIRGRTDAVAEEMMAGPDDDAGDDI

Nucleotide

• Length: 1080 bp

>NTDB_id=68442 SPYCA_RS09285 WP_120219917.1 1967818..1968897(-) (recA) [Sphingopyxis sp. FD7]
ATGGCCGGACAATTGTCACTCGTCGAATCGGGGAAATCAGTGAACGGAACGGACAGGCAGAAGGCGCTCGACGCCGCATT
GGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGTGATGAAGCTGGGGTCGAAGGAAGCGATGCAGGTCGAGGCGATTT
CGACCGGGTCGCTCGGCCTCGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCC
GAAAGCTCGGGCAAGACGACGCTGGCCCTGCATTGCATCGCCGAAGCGCAGAAGATGGGCGGCACGGCGGCGTTCGTCGA
TGCCGAACATGCGCTCGACCCCGTCTATGCGCGCAAGCTGGGCGTCGACATTGACGAACTCATTGTGTCGCAACCCGACA
CGGGCGAGCAGGCGCTTGAGATCGTCGATACGCTCGTGCGCTCGAACGCGATCGACGTGCTCGTCGTCGACTCGGTCGCC
GCGCTTGTGCCGCGCGCCGAGATCGAGGGCGAGATGGGCGACAGTCACGTCGGCCTGCAGGCGCGGCTGATGTCGCAGAG
CTTGCGCAAGCTCACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGCAACCCCGAAACCACGACCGGCGGCAATGCGCTCAAATTCTATGCCTCGGTCCGCCTCGACATCCGCCGC
ACCGGCCAGATCAAGAATGGCGACGAGATCGTCGGCAACACCACGCGCGTCAAGGTGGTGAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTTGAGTTCGACATCATGTACGGGCAGGGCATTTCCAAGATCGGCGAGATTCTCGATATCGGCGTCAAGG
CCGGGCTGGTCGAAAAATCGGGTGCCTGGTTCAGCTATGACTCGATCCGCATCGGGCAGGGCCGCGAGAACGCCAAAAAC
TTCCTGACCGAAAATCCCGAACTTCGCGAACGGCTCGAAGCCGCGATCCGCGGCCGCACCGACGCGGTCGCCGAAGAAAT
GATGGCGGGTCCCGACGACGACGCGGGCGACGACATCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (21-282)

3D structure

• AlphaFold DB: A0A2Z5UM84

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	67.733	95.822	0.649
recA	Vibrio cholerae strain A1552	67.857	93.593	0.635
recA	Vibrio cholerae O1 biovar El Tor strain E7946	67.857	93.593	0.635
recA	Glaesserella parasuis strain SC1401	65.13	96.657	0.63
recA	Neisseria gonorrhoeae MS11	70.405	89.415	0.63
recA	Neisseria gonorrhoeae MS11	70.405	89.415	0.63
recA	Neisseria gonorrhoeae strain FA1090	70.405	89.415	0.63
recA	Acinetobacter baylyi ADP1	66.071	93.593	0.618
recA	Acinetobacter baumannii D1279779	68.75	89.136	0.613
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	65.861	92.201	0.607
recA	Ralstonia pseudosolanacearum GMI1000	70.779	85.794	0.607
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.158	95.265	0.602
recA	Bacillus subtilis subsp. subtilis str. 168	66.667	89.415	0.596
recA	Latilactobacillus sakei subsp. sakei 23K	62.242	94.429	0.588
recA	Helicobacter pylori strain NCTC11637	62.611	93.872	0.588
recA	Helicobacter pylori 26695	62.315	93.872	0.585
recA	Streptococcus pyogenes NZ131	60.117	94.986	0.571
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.702	91.643	0.565
recA	Streptococcus pneumoniae Rx1	61.89	91.365	0.565
recA	Streptococcus pneumoniae D39	61.89	91.365	0.565
recA	Streptococcus pneumoniae R6	61.89	91.365	0.565
recA	Streptococcus pneumoniae TIGR4	61.89	91.365	0.565
recA	Streptococcus mitis NCTC 12261	61.963	90.808	0.563
recA	Streptococcus mitis SK321	61.963	90.808	0.563
recA	Streptococcus mutans UA159	58.944	94.986	0.56
recA	Lactococcus lactis subsp. cremoris KW2	59.202	90.808	0.538