Detailed information NTG0068296

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: HPPMSS1_RS06495
• Genome accession: NZ_AP017633
• Coordinates: 1367435..1368478 (-)
• Length: 347 a.a.
• NCBI ID: WP_000963118.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PMSS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1362435..1373478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPMSS1_RS06465 (HPATCC43504_RS06710)	-	1362683..1363801 (+)	1119	WP_077231694.1	glycosyltransferase family 8 protein	-
HPPMSS1_RS06470 (HPATCC43504_RS06715)	-	1363798..1364754 (-)	957	WP_000952282.1	PDC sensor domain-containing protein	-
HPPMSS1_RS06475 (HPATCC43504_RS06720)	-	1364776..1365264 (-)	489	WP_077231693.1	shikimate kinase	-
HPPMSS1_RS06480 (HPATCC43504_RS06725)	-	1365269..1365865 (-)	597	WP_173668922.1	AMIN domain-containing protein	-
HPPMSS1_RS06485 (HPATCC43504_RS06730)	-	1365876..1366151 (-)	276	WP_000146212.1	hypothetical protein	-
HPPMSS1_RS06490 (HPATCC43504_RS06735)	eno	1366144..1367424 (-)	1281	WP_077231691.1	phosphopyruvate hydratase	-
HPPMSS1_RS06495 (HPATCC43504_RS06740)	recA	1367435..1368478 (-)	1044	WP_000963118.1	recombinase RecA	Machinery gene
HPPMSS1_RS06500 (HPATCC43504_RS06745)	-	1368577..1369440 (+)	864	WP_077231690.1	menaquinone biosynthesis family protein	-
HPPMSS1_RS06505 (HPATCC43504_RS06750)	-	1369437..1370204 (-)	768	WP_077231689.1	hypothetical protein	-
HPPMSS1_RS06510 (HPATCC43504_RS06755)	-	1370284..1370874 (-)	591	WP_077231688.1	hypothetical protein	-
HPPMSS1_RS06515 (HPATCC43504_RS06760)	-	1370886..1371470 (-)	585	WP_077231687.1	hypothetical protein	-
HPPMSS1_RS06520 (HPATCC43504_RS06765)	-	1371571..1371777 (-)	207	WP_000670506.1	DUF4006 family protein	-
HPPMSS1_RS06525 (HPATCC43504_RS06770)	ccoP	1371788..1372666 (-)	879	WP_077231686.1	cytochrome-c oxidase, cbb3-type subunit III	-
HPPMSS1_RS06530 (HPATCC43504_RS06775)	-	1372668..1372886 (-)	219	WP_001864632.1	cytochrome c oxidase, cbb3-type, CcoQ subunit	-

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 37639.37 Da
• Isoelectric Point: 5.3408

>NTDB_id=68296 HPPMSS1_RS06495 WP_000963118.1 1367435..1368478(-) (recA) [Helicobacter pylori strain PMSS1]
MAIDEDKQKAISLAIKQIDKVFGKGALVRLGDKQVEKIDAISTGSLGLDLALGIGGVPKGRIIEIYGPESSGKTTLSLHI
IAECQKNGGVCAFIDAEHALDVYYAKRLGVDTENLLVSQPSTGEEALEILETITRSGGIDLVVVDSVAALTPKAEIDGDM
GDQHVGLQARLMSHALRKITGVLHKMNTTLVFINQIRMKIGMMGYGSPETTTGGNALKFYASVRIDIRRIAALKQNEQHI
GNRAKAKVVKNKVAPPFREAEFDIMFGEGISKEGEIIDYGVKLDIVDKSGAWLSYQDKKLGQGRENAKALLKEDKALADE
ITLKIKESIGSNEEIMPLPDEPLEEME

Nucleotide

• Length: 1044 bp

>NTDB_id=68296 HPPMSS1_RS06495 WP_000963118.1 1367435..1368478(-) (recA) [Helicobacter pylori strain PMSS1]
ATGGCAATAGATGAAGACAAACAAAAAGCGATTTCTTTAGCGATCAAACAAATTGATAAGGTTTTTGGTAAGGGGGCGTT
GGTGCGCCTTGGGGATAAGCAAGTAGAAAAGATTGACGCTATTTCTACAGGCTCGTTAGGGTTGGATCTGGCTTTAGGGA
TTGGGGGCGTTCCAAAAGGTAGGATCATTGAAATTTATGGGCCAGAGTCAAGCGGGAAGACCACTCTAAGTTTGCATATT
ATTGCAGAATGCCAAAAAAATGGTGGCGTGTGCGCGTTCATTGACGCTGAGCATGCCCTAGACGTGTATTATGCTAAGAG
ATTGGGCGTGGATACGGAAAATCTACTCGTTTCCCAACCAAGCACGGGCGAAGAAGCTTTAGAGATTTTAGAAACGATCA
CCAGAAGCGGAGGGATTGATTTGGTGGTGGTGGATTCGGTGGCGGCCCTTACGCCTAAAGCGGAGATTGATGGGGATATG
GGCGATCAGCATGTGGGCTTGCAAGCAAGGCTTATGAGCCATGCGTTAAGAAAAATCACCGGTGTCTTGCACAAAATGAA
CACTACTCTCGTTTTTATCAATCAAATCAGGATGAAGATTGGCATGATGGGTTATGGGAGTCCAGAGACCACAACAGGGG
GTAATGCCTTAAAATTCTATGCGAGCGTTAGGATTGATATTAGAAGAATCGCCGCTTTAAAACAAAACGAACAGCATATC
GGTAACAGGGCTAAAGCTAAAGTGGTTAAAAATAAAGTCGCTCCGCCCTTTAGAGAAGCGGAATTTGACATCATGTTTGG
GGAAGGGATTTCTAAAGAGGGCGAAATCATTGACTATGGCGTGAAATTAGACATTGTGGATAAGAGCGGGGCATGGCTTA
GCTACCAGGATAAAAAGCTAGGGCAAGGTCGAGAAAACGCTAAAGCCTTACTAAAAGAAGATAAAGCCCTAGCGGATGAA
ATCACTCTTAAGATTAAAGAGAGTATTGGCTCTAATGAAGAGATCATGCCCTTACCCGATGAGCCTTTAGAAGAAATGGA
ATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Helicobacter pylori strain NCTC11637	98.847	100	0.988
recA	Helicobacter pylori 26695	98.271	100	0.983
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	78.049	94.524	0.738
recA	Neisseria gonorrhoeae MS11	66.462	93.66	0.622
recA	Neisseria gonorrhoeae MS11	66.462	93.66	0.622
recA	Neisseria gonorrhoeae strain FA1090	66.462	93.66	0.622
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.253	95.677	0.605
recA	Bacillus subtilis subsp. subtilis str. 168	64.308	93.66	0.602
recA	Acinetobacter baumannii D1279779	63.303	94.236	0.597
recA	Acinetobacter baylyi ADP1	62.997	94.236	0.594
recA	Ralstonia pseudosolanacearum GMI1000	61.012	96.83	0.591
recA	Vibrio cholerae O1 biovar El Tor strain E7946	60.417	96.83	0.585
recA	Vibrio cholerae strain A1552	60.417	96.83	0.585
recA	Pseudomonas stutzeri DSM 10701	59.357	98.559	0.585
recA	Glaesserella parasuis strain SC1401	60.366	94.524	0.571
recA	Streptococcus pneumoniae Rx1	55.271	100	0.559
recA	Streptococcus pneumoniae D39	55.271	100	0.559
recA	Streptococcus pneumoniae R6	55.271	100	0.559
recA	Streptococcus pneumoniae TIGR4	55.271	100	0.559
recA	Latilactobacillus sakei subsp. sakei 23K	54.342	100	0.559
recA	Streptococcus pyogenes NZ131	56.97	95.101	0.542
recA	Lactococcus lactis subsp. cremoris KW2	57.143	94.813	0.542
recA	Streptococcus mitis NCTC 12261	56.839	94.813	0.539
recA	Streptococcus mitis SK321	56.535	94.813	0.536
recA	Streptococcus mutans UA159	55.389	96.254	0.533
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	55.521	93.948	0.522