Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CPY96_RS08630 Genome accession   NZ_AP017630
Coordinates   1966092..1967150 (-) Length   352 a.a.
NCBI ID   WP_096516382.1    Uniprot ID   -
Organism   Clostridium perfringens strain CBA7123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961092..1972150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY96_RS08610 - 1962030..1962290 (-) 261 WP_003459789.1 HPr family phosphocarrier protein -
  CPY96_RS08615 - 1962385..1963578 (-) 1194 WP_096516381.1 pyridoxal phosphate-dependent aminotransferase -
  CPY96_RS08620 - 1963731..1963991 (-) 261 WP_003459803.1 stage V sporulation protein S -
  CPY96_RS08625 rny 1964209..1965744 (-) 1536 WP_003459753.1 ribonuclease Y -
  CPY96_RS08630 recA 1966092..1967150 (-) 1059 WP_096516382.1 recombinase RecA Machinery gene
  CPY96_RS08635 pgsA 1967286..1967876 (-) 591 WP_096516383.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CPY96_RS08640 rimO 1967860..1969197 (-) 1338 WP_096516384.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CPY96_RS08645 - 1969266..1971641 (-) 2376 WP_096516385.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38010.47 Da        Isoelectric Point: 5.0692

>NTDB_id=68253 CPY96_RS08630 WP_096516382.1 1966092..1967150(-) (recA) [Clostridium perfringens strain CBA7123]
MANIDKDKLKAIEMAMGQIEKQFGKGSVMKLGEQGAPQMDAVSTGCLDLDIALGIGGVPKGRIIEIYGPESSGKTTVALH
VVAEAQKLGGASAYIDAEHALDPVYAKRLGVNIDDLVVSQPDTGEQALEITEALVRSGAIDVLVVDSVAALVPRAEIEGE
MGDSHVGLQARLMSQALRKLTGTINKSNCVVIFINQLREKVGIMFGNPETTPGGRALKFYASVRMDIRRIDSIKQGDGIT
GNRTRVKIVKNKVAPPFKQAEFDIMYNEGISKEGNIVDVGVKENIVQKSGAWFSYGDIRLGQGRENAKQYLKENPAVALD
IENQIREKYSLPLAKAVESVNIEENTEESVES

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=68253 CPY96_RS08630 WP_096516382.1 1966092..1967150(-) (recA) [Clostridium perfringens strain CBA7123]
ATGGCAAATATAGATAAAGATAAATTAAAAGCTATTGAGATGGCTATGGGTCAAATAGAGAAGCAATTTGGAAAGGGATC
AGTAATGAAACTTGGAGAGCAAGGAGCTCCTCAAATGGATGCTGTTTCTACTGGATGCTTAGATCTTGATATAGCTTTAG
GAATTGGTGGAGTACCAAAAGGAAGAATTATTGAGATATATGGACCAGAGAGTTCAGGTAAAACAACAGTGGCTTTACAT
GTAGTAGCAGAGGCACAAAAATTAGGTGGAGCATCAGCATATATAGATGCAGAGCATGCTTTAGACCCAGTTTATGCAAA
AAGATTAGGTGTTAATATAGATGATTTAGTAGTTTCACAACCAGATACAGGAGAGCAAGCTTTAGAGATAACAGAAGCTT
TAGTTAGATCAGGAGCTATAGATGTTTTAGTTGTGGACTCAGTTGCGGCTTTAGTTCCAAGAGCAGAAATTGAAGGTGAA
ATGGGTGATTCTCACGTTGGTCTTCAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTAACAGGAACAATAAACAAATC
AAACTGCGTAGTAATATTCATAAACCAATTAAGAGAAAAAGTTGGTATAATGTTTGGTAATCCAGAAACAACACCAGGTG
GTAGAGCATTAAAGTTCTATGCCTCAGTTAGAATGGATATAAGAAGAATAGATTCAATAAAACAAGGTGACGGAATAACT
GGTAATAGAACAAGAGTTAAAATAGTTAAGAATAAGGTTGCCCCTCCATTTAAGCAAGCCGAATTTGATATAATGTACAA
TGAAGGTATATCAAAAGAAGGTAACATAGTAGACGTTGGAGTAAAAGAGAATATAGTGCAAAAAAGTGGTGCTTGGTTCT
CATATGGAGACATAAGATTAGGCCAAGGTAGAGAAAATGCTAAACAATATTTAAAAGAGAATCCAGCAGTTGCTTTAGAT
ATAGAAAATCAAATAAGAGAAAAATATTCTCTTCCTTTAGCTAAGGCTGTTGAATCAGTAAATATAGAAGAAAATACAGA
AGAGTCTGTTGAAAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.077

92.33

0.656
  recA Helicobacter pylori 26695

67.077

92.33

0.619
  recA Helicobacter pylori strain NCTC11637

67.077

92.33

0.619
  recA Acinetobacter baylyi ADP1

63.188

98.011

0.619
  recA Pseudomonas stutzeri DSM 10701

65.846

92.33

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

66.355

91.193

0.605
  recA Streptococcus mutans UA159

60.857

99.432

0.605
  recA Acinetobacter baumannii D1279779

65.231

92.33

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.634

93.182

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.134

93.466

0.599
  recA Vibrio cholerae strain A1552

64.134

93.466

0.599
  recA Streptococcus pneumoniae Rx1

61.516

97.443

0.599
  recA Streptococcus pneumoniae TIGR4

61.516

97.443

0.599
  recA Streptococcus pneumoniae R6

61.516

97.443

0.599
  recA Streptococcus pneumoniae D39

61.516

97.443

0.599
  recA Glaesserella parasuis strain SC1401

61.047

97.727

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.815

92.045

0.597
  recA Streptococcus mitis SK321

64.11

92.614

0.594
  recA Neisseria gonorrhoeae MS11

64.798

91.193

0.591
  recA Neisseria gonorrhoeae MS11

64.798

91.193

0.591
  recA Neisseria gonorrhoeae strain FA1090

64.798

91.193

0.591
  recA Streptococcus mitis NCTC 12261

63.804

92.614

0.591
  recA Streptococcus pyogenes NZ131

63.303

92.898

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.5

93.182

0.582
  recA Lactococcus lactis subsp. cremoris KW2

62.883

92.614

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.111

92.045

0.562

Multiple sequence alignment