Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M0C34_RS14340 Genome accession   NZ_CP096670
Coordinates   3168820..3169872 (-) Length   350 a.a.
NCBI ID   WP_248712360.1    Uniprot ID   -
Organism   Agarivorans sp. TSD2052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3163820..3174872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0C34_RS14320 (M0C34_14320) csrA 3164031..3164210 (-) 180 WP_137671596.1 carbon storage regulator CsrA -
  M0C34_RS14325 (M0C34_14325) - 3164319..3165533 (-) 1215 WP_248712357.1 aspartate kinase -
  M0C34_RS14330 (M0C34_14330) alaS 3165571..3168195 (-) 2625 WP_248712358.1 alanine--tRNA ligase -
  M0C34_RS14335 (M0C34_14335) - 3168337..3168786 (-) 450 WP_248712359.1 regulatory protein RecX -
  M0C34_RS14340 (M0C34_14340) recA 3168820..3169872 (-) 1053 WP_248712360.1 recombinase RecA Machinery gene
  M0C34_RS14345 (M0C34_14345) mutS 3170041..3172614 (+) 2574 WP_248712361.1 DNA mismatch repair protein MutS -
  M0C34_RS14350 (M0C34_14350) rpoS 3172709..3173659 (-) 951 WP_248712362.1 RNA polymerase sigma factor RpoS -
  M0C34_RS14355 (M0C34_14355) - 3173715..3174518 (-) 804 WP_248712363.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37702.34 Da        Isoelectric Point: 5.3264

>NTDB_id=682221 M0C34_RS14340 WP_248712360.1 3168820..3169872(-) (recA) [Agarivorans sp. TSD2052]
MDQNKQKALAAALGQIEKQFGKGSIMKLGDNRTMDIETISTGSLSIDIALGAGGLPMGRVVEIYGPESSGKTTLTLEAIA
QAQKVGKVCAFVDAEHALDPIYAKKLGVDVDNLLVSQPDTGEQALEITDMLARSGAVDMIVIDSVAALTPKAEIEGDMGD
SHVGLQARLMSQALRKLTGTLKQTNCMCIFINQIRMKIGVMFGNPETTSGGNALKFYASVRLDIRRIGAVKSGDEVVGNE
TRVKVVKNKIAAPFKQAEFQIMYGEGFNRYGELVDLGVREKLVDKAGAWFSYKGKKIGQGKANASTYLKEHPEMAQEIEM
TIRKNLLTPEVVEETIDAATTEDAPVNTEA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=682221 M0C34_RS14340 WP_248712360.1 3168820..3169872(-) (recA) [Agarivorans sp. TSD2052]
ATGGATCAGAACAAACAAAAGGCATTAGCTGCGGCCCTAGGCCAAATTGAAAAACAATTTGGTAAAGGCTCAATCATGAA
GCTCGGCGATAACCGTACCATGGATATTGAAACGATTTCTACTGGTTCTTTGTCGATTGATATTGCCTTAGGCGCTGGCG
GCTTGCCTATGGGGCGAGTTGTAGAGATCTATGGCCCAGAAAGTTCAGGTAAAACCACCTTAACTTTAGAAGCCATCGCT
CAAGCACAAAAAGTAGGTAAAGTTTGTGCCTTTGTTGATGCTGAGCACGCCTTAGACCCTATTTACGCCAAAAAATTGGG
TGTTGATGTTGACAACCTTTTGGTGTCACAGCCTGATACTGGGGAGCAAGCCTTAGAAATTACCGATATGTTAGCTCGCT
CTGGTGCCGTAGATATGATCGTTATTGACTCGGTAGCAGCACTGACTCCTAAAGCCGAAATTGAAGGCGACATGGGCGAT
AGTCACGTAGGTTTGCAAGCGCGTTTAATGTCACAAGCACTACGTAAGCTTACCGGTACCTTAAAGCAAACTAACTGTAT
GTGTATCTTCATTAACCAAATTCGTATGAAGATCGGGGTTATGTTTGGTAATCCAGAAACCACCTCTGGTGGTAATGCAT
TGAAATTTTACGCGTCAGTTCGCTTGGATATTCGCCGCATTGGCGCCGTGAAGAGCGGTGATGAAGTAGTGGGTAATGAA
ACACGCGTTAAAGTGGTTAAAAACAAGATTGCTGCGCCATTCAAACAAGCTGAATTCCAAATCATGTACGGTGAAGGTTT
TAACCGTTATGGTGAGCTGGTTGACCTTGGTGTAAGAGAAAAACTGGTTGATAAAGCCGGCGCTTGGTTCTCCTATAAAG
GTAAAAAAATTGGTCAAGGTAAGGCTAATGCTTCTACTTACTTAAAGGAGCACCCAGAAATGGCTCAAGAAATTGAAATG
ACTATACGTAAGAATTTGCTGACGCCTGAAGTGGTAGAAGAAACGATAGATGCAGCCACCACTGAAGACGCACCAGTGAA
TACTGAAGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.532

97.714

0.777
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.532

97.714

0.777
  recA Pseudomonas stutzeri DSM 10701

73.121

98.857

0.723
  recA Acinetobacter baylyi ADP1

71.594

98.571

0.706
  recA Acinetobacter baumannii D1279779

74.085

93.714

0.694
  recA Glaesserella parasuis strain SC1401

71.914

92.571

0.666
  recA Neisseria gonorrhoeae MS11

70.679

92.571

0.654
  recA Neisseria gonorrhoeae MS11

70.679

92.571

0.654
  recA Neisseria gonorrhoeae strain FA1090

70.679

92.571

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.111

90

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

93.429

0.614
  recA Helicobacter pylori strain NCTC11637

62.84

94.571

0.594
  recA Helicobacter pylori 26695

62.538

94.571

0.591
  recA Streptococcus pneumoniae D39

58.807

100

0.591
  recA Streptococcus pneumoniae R6

58.807

100

0.591
  recA Streptococcus pneumoniae TIGR4

58.807

100

0.591
  recA Streptococcus pneumoniae Rx1

58.807

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.349

94.857

0.591
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

58.309

98

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.461

90.571

0.566
  recA Streptococcus pyogenes NZ131

60.991

92.286

0.563
  recA Streptococcus mitis SK321

60.681

92.286

0.56
  recA Streptococcus mitis NCTC 12261

60.681

92.286

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.692

92.857

0.554
  recA Streptococcus mutans UA159

59.133

92.286

0.546