Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M1B72_RS02440 Genome accession   NZ_CP096574
Coordinates   555959..556975 (-) Length   338 a.a.
NCBI ID   WP_183350278.1    Uniprot ID   A0A6V8N1Q0
Organism   Geomonas paludis strain RG22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 550959..561975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1B72_RS02425 (M1B72_02425) alaS 551363..553990 (-) 2628 WP_183350272.1 alanine--tRNA ligase -
  M1B72_RS02430 (M1B72_02430) - 554330..554791 (-) 462 WP_183350274.1 regulatory protein RecX -
  M1B72_RS02435 (M1B72_02435) - 554792..555955 (-) 1164 WP_183350276.1 type IV pilus twitching motility protein PilT -
  M1B72_RS02440 (M1B72_02440) recA 555959..556975 (-) 1017 WP_183350278.1 recombinase RecA Machinery gene
  M1B72_RS02445 (M1B72_02445) - 557307..559277 (-) 1971 WP_183350280.1 ATP-binding protein -
  M1B72_RS02450 (M1B72_02450) - 559316..560560 (-) 1245 WP_183350282.1 competence/damage-inducible protein A -
  M1B72_RS02455 (M1B72_02455) - 560557..561006 (-) 450 WP_183350285.1 phosphatidylglycerophosphatase A -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36265.81 Da        Isoelectric Point: 5.5422

>NTDB_id=681828 M1B72_RS02440 WP_183350278.1 555959..556975(-) (recA) [Geomonas paludis strain RG22]
MLDKEKAEKALDLAMSQIEKQFGKGAIMRLGNEEALPDVAAIPTGSLSLDLALGVGGVPRGRVIEIFGPESSGKTTLALH
VIAEAQKLGGIAAFVDAEHALDIGYARKLGVKTDDLLVSQPDTGEQALEIAETLVRSGAIDVLVVDSVAALVPKAEIEGD
MGDSHMGLQARLMSQALRKLTGIISKSNCCVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRKIAALKQGNDMI
GSRTRVKVVKNKVAPPFKEVEFDILYGEGISKEGDVLDLAVERNVVEKSGAWFSYGKERIGQGRENSRLFLKEHPEITEE
IRAKLTAPEQDAQAPGAA

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=681828 M1B72_RS02440 WP_183350278.1 555959..556975(-) (recA) [Geomonas paludis strain RG22]
ATGCTCGATAAGGAAAAAGCGGAAAAAGCCCTCGACCTGGCCATGAGCCAGATCGAGAAACAGTTCGGCAAAGGGGCCAT
CATGAGGCTGGGCAACGAGGAGGCGCTGCCGGACGTGGCGGCCATCCCGACCGGCTCCCTCTCCCTGGACCTGGCTCTCG
GCGTGGGGGGCGTACCCCGCGGCCGCGTCATCGAGATCTTCGGACCGGAATCCTCCGGTAAAACCACCCTCGCCCTGCAC
GTAATCGCCGAGGCCCAGAAACTGGGCGGCATCGCGGCCTTCGTCGACGCCGAACACGCCCTCGACATCGGCTACGCCAG
GAAGCTCGGCGTCAAGACCGACGACCTGCTGGTCTCCCAACCGGACACCGGCGAGCAGGCGCTCGAGATCGCGGAAACCC
TGGTGCGCTCCGGCGCCATCGACGTACTCGTGGTCGACTCCGTCGCCGCCCTGGTCCCGAAAGCGGAGATCGAGGGGGAC
ATGGGCGACTCGCACATGGGCCTGCAGGCGCGCCTCATGTCCCAGGCACTAAGGAAACTGACCGGCATCATCTCCAAGTC
CAACTGCTGCGTCATCTTCATCAACCAGATCAGGATGAAGATCGGCGTCATGTTCGGCAACCCGGAGACCACCACCGGCG
GCAACGCACTCAAGTTCTACGCCTCGGTGCGCATGGACATCAGGAAGATCGCCGCGCTCAAGCAGGGCAACGACATGATC
GGCTCCCGCACCCGCGTCAAGGTGGTCAAGAACAAGGTAGCGCCCCCGTTCAAGGAAGTGGAATTCGACATCCTCTACGG
CGAAGGGATCTCCAAGGAAGGGGACGTCCTCGACCTGGCCGTCGAGCGCAACGTGGTCGAGAAGAGCGGCGCCTGGTTCT
CCTACGGCAAGGAGCGCATCGGCCAGGGACGCGAAAACTCCCGGCTGTTCCTCAAGGAGCACCCGGAGATCACCGAAGAA
ATCAGGGCAAAACTCACCGCTCCAGAACAAGACGCCCAAGCACCCGGCGCAGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V8N1Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.071

99.408

0.657
  recA Glaesserella parasuis strain SC1401

66.97

97.633

0.654
  recA Ralstonia pseudosolanacearum GMI1000

71.753

91.124

0.654
  recA Bacillus subtilis subsp. subtilis str. 168

68.339

94.379

0.645
  recA Acinetobacter baylyi ADP1

67.702

95.266

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.108

92.899

0.642
  recA Vibrio cholerae strain A1552

67.29

94.97

0.639
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.29

94.97

0.639
  recA Helicobacter pylori strain NCTC11637

67.081

95.266

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.453

92.012

0.639
  recA Neisseria gonorrhoeae MS11

69.453

92.012

0.639
  recA Neisseria gonorrhoeae MS11

69.453

92.012

0.639
  recA Acinetobacter baumannii D1279779

67.823

93.787

0.636
  recA Helicobacter pylori 26695

66.46

95.266

0.633
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

65.031

96.45

0.627
  recA Latilactobacillus sakei subsp. sakei 23K

62.09

99.112

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.158

95.562

0.604
  recA Streptococcus pneumoniae R6

63.208

94.083

0.595
  recA Streptococcus pneumoniae Rx1

63.208

94.083

0.595
  recA Streptococcus pneumoniae D39

63.208

94.083

0.595
  recA Streptococcus pneumoniae TIGR4

63.208

94.083

0.595
  recA Streptococcus mitis NCTC 12261

62.579

94.083

0.589
  recA Streptococcus mitis SK321

62.264

94.083

0.586
  recA Streptococcus pyogenes NZ131

61.682

94.97

0.586
  recA Streptococcus mutans UA159

60.87

95.266

0.58
  recA Lactococcus lactis subsp. cremoris KW2

59.877

95.858

0.574