Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M0M48_RS11375 Genome accession   NZ_CP096276
Coordinates   2292110..2293162 (-) Length   350 a.a.
NCBI ID   WP_215816172.1    Uniprot ID   -
Organism   Pimelobacter simplex strain N40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2287110..2298162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M48_RS11345 (M0M48_11320) - 2287685..2288428 (+) 744 WP_215816178.1 sirohydrochlorin chelatase -
  M0M48_RS11350 (M0M48_11325) - 2288436..2288855 (-) 420 WP_215816177.1 DUF3037 domain-containing protein -
  M0M48_RS11355 (M0M48_11330) - 2288852..2289622 (-) 771 WP_252373697.1 HipA family kinase -
  M0M48_RS11360 (M0M48_11335) - 2289636..2290493 (-) 858 WP_257751214.1 PPK2 family polyphosphate kinase -
  M0M48_RS11365 (M0M48_11340) - 2290529..2291050 (-) 522 WP_215816174.1 phosphoribosyltransferase -
  M0M48_RS11370 (M0M48_11345) - 2291037..2291612 (-) 576 WP_257751215.1 regulatory protein RecX -
  M0M48_RS11375 (M0M48_11350) recA 2292110..2293162 (-) 1053 WP_215816172.1 recombinase RecA Machinery gene
  M0M48_RS11380 (M0M48_11355) - 2293354..2294610 (-) 1257 WP_257751216.1 MFS transporter -
  M0M48_RS11385 (M0M48_11360) - 2294607..2294801 (-) 195 WP_215816170.1 DUF3046 domain-containing protein -
  M0M48_RS11390 (M0M48_11365) - 2294845..2296566 (-) 1722 WP_257751217.1 amidohydrolase -
  M0M48_RS11395 (M0M48_11370) - 2296548..2297093 (-) 546 WP_257751218.1 DinB family protein -
  M0M48_RS11400 (M0M48_11375) - 2297143..2297670 (-) 528 WP_257751219.1 hypothetical protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37200.33 Da        Isoelectric Point: 4.7216

>NTDB_id=680855 M0M48_RS11375 WP_215816172.1 2292110..2293162(-) (recA) [Pimelobacter simplex strain N40]
MAGDDRQKALDAALLNIEKSYGKGSVMRLGDDSRAPLDVIPTGAISLDVALGIGGLPRGRVVEIYGPESSGKTTVALHAV
ASAQAAGGIVAFIDAEHALDPDYAKALGVDTDALLVSQPDSGEQALEIADMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKMTGALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYSSVRLDVRRIETLKDGTDMVGN
RTRVKVVKNKVAPPFKQAEFDIMYGKGISREGGLIDVGVEAGLVRKAGAWYTYEGDQLGQGKENARTFLKDNPDLANELE
KKILEKLGVTPTVDGDFTDLSDEPIGVDSF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=680855 M0M48_RS11375 WP_215816172.1 2292110..2293162(-) (recA) [Pimelobacter simplex strain N40]
ATGGCTGGAGACGACCGCCAGAAGGCCCTCGACGCCGCGCTTCTCAACATCGAGAAGTCCTACGGCAAGGGCTCCGTGAT
GCGACTCGGTGACGACTCGCGCGCCCCCCTCGACGTGATCCCGACCGGAGCGATCTCCCTCGACGTCGCCCTCGGCATCG
GTGGACTTCCCCGCGGCCGGGTCGTGGAGATCTACGGCCCCGAGTCCAGCGGTAAGACGACCGTCGCGCTCCACGCCGTG
GCCAGCGCCCAGGCCGCCGGCGGCATCGTGGCCTTCATCGACGCCGAGCACGCGCTCGACCCCGACTACGCCAAGGCCCT
CGGCGTCGACACCGACGCCCTCCTGGTCTCCCAGCCCGACTCCGGTGAGCAGGCCCTCGAGATCGCCGACATGCTCATCC
GCTCCGGCGCCCTCGACCTCATCGTCATCGACTCCGTCGCCGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGT
GACAGCCACGTCGGTCTCCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGATGACCGGTGCCCTCAACCAGTCCAAGAC
GACCGCCATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTCATGTTCGGCTCGCCCGAGACCACCACCGGTGGCCGCG
CGCTGAAGTTCTACTCCTCCGTGCGCCTCGACGTCCGCCGGATCGAGACCCTCAAGGACGGCACCGACATGGTCGGCAAC
CGGACCCGGGTCAAGGTCGTCAAGAACAAGGTCGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCATGTACGGCAAGGG
CATCTCCCGCGAGGGTGGTCTCATCGACGTCGGCGTCGAGGCGGGCCTCGTCCGCAAGGCCGGCGCCTGGTACACCTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCACCTTCCTCAAGGACAACCCCGACCTGGCCAACGAGCTGGAG
AAGAAGATCCTCGAGAAGCTCGGCGTCACCCCCACCGTCGACGGCGACTTCACCGACCTCTCCGACGAGCCGATCGGCGT
CGACTCGTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

63.112

99.143

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

67.077

92.857

0.623
  recA Pseudomonas stutzeri DSM 10701

66.055

93.429

0.617
  recA Ralstonia pseudosolanacearum GMI1000

67.937

90

0.611
  recA Streptococcus mitis SK321

60.623

100

0.611
  recA Streptococcus mitis NCTC 12261

60.623

100

0.611
  recA Streptococcus mutans UA159

64.157

94.857

0.609
  recA Vibrio cholerae strain A1552

65.741

92.571

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.741

92.571

0.609
  recA Acinetobacter baumannii D1279779

64.438

94

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.17

97.429

0.606
  recA Acinetobacter baylyi ADP1

65.432

92.571

0.606
  recA Streptococcus pneumoniae Rx1

60.227

100

0.606
  recA Streptococcus pneumoniae TIGR4

60.227

100

0.606
  recA Streptococcus pneumoniae R6

60.227

100

0.606
  recA Streptococcus pneumoniae D39

60.227

100

0.606
  recA Streptococcus pyogenes NZ131

63.939

94.286

0.603
  recA Neisseria gonorrhoeae strain FA1090

65.109

91.714

0.597
  recA Neisseria gonorrhoeae MS11

65.109

91.714

0.597
  recA Neisseria gonorrhoeae MS11

65.109

91.714

0.597
  recA Helicobacter pylori strain NCTC11637

60.35

98

0.591
  recA Helicobacter pylori 26695

60.35

98

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

94.286

0.583
  recA Lactococcus lactis subsp. cremoris KW2

62.769

92.857

0.583
  recA Glaesserella parasuis strain SC1401

60.182

94

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.502

91.714

0.546