Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M0M83_RS05010 Genome accession   NZ_CP096258
Coordinates   1158032..1159099 (+) Length   355 a.a.
NCBI ID   WP_125893621.1    Uniprot ID   -
Organism   Providencia rettgeri strain Pre20-95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153032..1164099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M83_RS04990 (M0M83_04990) aroL 1153420..1153917 (+) 498 WP_125893629.1 shikimate kinase AroL -
  M0M83_RS04995 (M0M83_04995) aas 1154058..1156205 (+) 2148 WP_248467767.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  M0M83_RS05000 (M0M83_05000) lplT 1156207..1157409 (+) 1203 WP_248467769.1 lysophospholipid transporter LplT -
  M0M83_RS05005 (M0M83_05005) pncC 1157424..1157927 (+) 504 WP_125893623.1 nicotinamide-nucleotide amidase -
  M0M83_RS05010 (M0M83_05010) recA 1158032..1159099 (+) 1068 WP_125893621.1 recombinase RecA Machinery gene
  M0M83_RS05015 (M0M83_05015) alaS 1159426..1162053 (+) 2628 WP_213912856.1 alanine--tRNA ligase -
  M0M83_RS05020 (M0M83_05020) csrA 1162281..1162466 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38151.48 Da        Isoelectric Point: 4.8091

>NTDB_id=680706 M0M83_RS05010 WP_125893621.1 1158032..1159099(+) (recA) [Providencia rettgeri strain Pre20-95]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPEASGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPDVAQEI
DTKLREMLLNHTGEFSSAATDFINDADEEEAPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=680706 M0M83_RS05010 WP_125893621.1 1158032..1159099(+) (recA) [Providencia rettgeri strain Pre20-95]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAACAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGCCGTATTGTTGAAATCTACGGCCCTGAAGCTTCAGGTAAAACAACACTAACTCTGCAAGTT
ATTGCTGCCGCACAGCGTAGTGGTAAAACGTGTGCTTTCATCGATGCTGAACATGCTTTAGATCCCATCTATGCTAAAAA
GCTAGGTGTAGATATCGATAACTTACTGTGTTCTCAACCCGATACCGGCGAGCAAGCCCTAGAAATTTGTGATGCATTAA
CTCGTTCAGGCGCAGTTGATGTGATCATCGTTGACTCCGTTGCCGCGTTAACACCGAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCTTAGCAGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCGGGTAACTTAAAAACATCTAA
CACTCTATTGATCTTCATTAACCAAATTCGTATGAAGATAGGTGTTATGTTTGGTAACCCAGAAACAACAACGGGTGGTA
ATGCATTAAAATTCTACGCATCTGTTCGCTTAGATATCCGTCGTATTGGCGCAGTGAAAAATGGCGAAGAGATCGTTGGT
AGTGAAACTCGCGTTAAAGTAGTAAAAAACAAAGTTGCAGCACCATTTAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTTGGCGAGTTAATTGACTTGGGTGTAAAACATAAGTTAATTGAAAAAGCTGGGGCCTGGTATAGCT
ATAACGGCGACAAGATTGGCCAAGGTAAAGCTAATTCAACAAATTATTTAAAAGAGCATCCAGACGTCGCTCAAGAAATT
GATACTAAACTGCGTGAAATGTTATTGAACCACACGGGTGAATTTAGTAGTGCGGCAACAGACTTTATCAATGATGCTGA
TGAAGAAGAAGCACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

79.609

100

0.803
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.609

100

0.803
  recA Pseudomonas stutzeri DSM 10701

74.924

92.113

0.69
  recA Acinetobacter baylyi ADP1

69.828

98.028

0.685
  recA Acinetobacter baumannii D1279779

73.394

92.113

0.676
  recA Glaesserella parasuis strain SC1401

67.806

98.873

0.67
  recA Neisseria gonorrhoeae MS11

64.873

99.437

0.645
  recA Neisseria gonorrhoeae MS11

64.873

99.437

0.645
  recA Neisseria gonorrhoeae strain FA1090

64.873

99.437

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.096

87.606

0.614
  recA Helicobacter pylori strain NCTC11637

62.997

92.113

0.58
  recA Helicobacter pylori 26695

62.691

92.113

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

89.859

0.566
  recA Streptococcus pneumoniae R6

61.92

90.986

0.563
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.986

0.563
  recA Streptococcus pneumoniae Rx1

61.92

90.986

0.563
  recA Streptococcus pneumoniae D39

61.92

90.986

0.563
  recA Streptococcus pneumoniae TIGR4

61.92

90.986

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.549

0.563
  recA Streptococcus mitis SK321

61.61

90.986

0.561
  recA Streptococcus pyogenes NZ131

60.923

91.549

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Streptococcus mitis NCTC 12261

61.3

90.986

0.558
  recA Streptococcus mutans UA159

60.615

91.549

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.735

93.521

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.423

0.541