Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MZ909_RS05340 Genome accession   NZ_CP096204
Coordinates   1056914..1057972 (+) Length   352 a.a.
NCBI ID   WP_286669028.1    Uniprot ID   -
Organism   Thermosynechococcus sp. B0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1051914..1062972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZ909_RS05325 (MZ909_05330) - 1054389..1055546 (-) 1158 WP_286669023.1 DUF58 domain-containing protein -
  MZ909_RS05330 (MZ909_05335) - 1055561..1055869 (-) 309 WP_286669025.1 co-chaperone YbbN -
  MZ909_RS05335 (MZ909_05340) - 1056051..1056839 (+) 789 WP_149818855.1 hypothetical protein -
  MZ909_RS05340 (MZ909_05345) recA 1056914..1057972 (+) 1059 WP_286669028.1 recombinase RecA Machinery gene
  MZ909_RS05345 (MZ909_05350) - 1057939..1058478 (-) 540 WP_286669030.1 GNAT family N-acetyltransferase -
  MZ909_RS05350 (MZ909_05355) - 1058480..1059346 (-) 867 WP_286669094.1 tetratricopeptide repeat protein -
  MZ909_RS05355 (MZ909_05360) - 1059573..1059842 (+) 270 WP_149818861.1 CD225/dispanin family protein -
  MZ909_RS05360 (MZ909_05365) nagA 1059813..1060961 (-) 1149 WP_286649941.1 N-acetylglucosamine-6-phosphate deacetylase -
  MZ909_RS05365 (MZ909_05370) - 1060958..1061191 (-) 234 WP_149818865.1 ferredoxin family protein -
  MZ909_RS05370 (MZ909_05375) - 1061242..1062873 (-) 1632 WP_286649942.1 ATP-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37742.00 Da        Isoelectric Point: 5.3113

>NTDB_id=680323 MZ909_RS05340 WP_286669028.1 1056914..1057972(+) (recA) [Thermosynechococcus sp. B0]
MSDTTLSPEKRKALELAVSQIERNFGKGSIMRLGDATRMKVETISSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLAL
HAVAEVQKAGGVAAFVDAEHALDPTYAAALGVDIENLLVAQPDTGEAGLEIVDQLVRSTAVDIVVVDSVAALVPRAEIEG
DMGDSHVGLQARLMSQALRKITGNIGKTGCTVIFLNQLRQKIGVTYGNPETTTGGTALKFYASVRLDIRRVQTLKKGTEE
FGIRAKVKVAKNKVAPPFRIAEFDIIFGKGISNLGCILDMAEETGVISRKGAWYSYNGENLAQGRDNTIKYMEENPAFAQ
EVEQQVRQKLDQGVAVSANTVTHTHEEMADEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=680323 MZ909_RS05340 WP_286669028.1 1056914..1057972(+) (recA) [Thermosynechococcus sp. B0]
ATGAGTGACACCACCCTTTCCCCCGAAAAGCGCAAAGCCCTTGAGCTTGCCGTCTCCCAAATCGAACGCAACTTTGGTAA
GGGCAGCATCATGCGCCTTGGGGATGCCACCCGCATGAAGGTGGAGACCATTTCCAGCGGTGCCCTCACCCTTGACCTTG
CTTTGGGGGGTGGACTGCCGAAGGGGCGGATCATTGAAATTTATGGCCCTGAAAGTTCGGGGAAAACTACCTTGGCGCTC
CATGCCGTAGCTGAAGTCCAAAAAGCCGGTGGCGTAGCTGCCTTTGTCGATGCTGAACATGCCCTTGATCCCACCTATGC
GGCTGCCCTCGGCGTGGACATTGAAAACCTACTGGTGGCTCAGCCAGACACTGGGGAAGCGGGTCTAGAAATTGTTGATC
AACTGGTGCGCTCGACAGCCGTGGATATTGTGGTGGTGGACTCCGTTGCGGCCTTGGTGCCCCGCGCTGAAATTGAGGGG
GATATGGGGGATAGCCATGTGGGGCTGCAAGCCCGCCTGATGAGCCAAGCCCTGCGCAAAATTACCGGTAATATTGGTAA
AACAGGCTGCACCGTGATTTTCCTGAACCAATTGCGGCAAAAAATTGGTGTCACCTACGGTAACCCAGAAACGACGACGG
GGGGAACTGCCCTCAAGTTCTATGCTTCAGTGCGCCTAGATATTCGGCGGGTGCAAACTCTGAAGAAGGGAACGGAGGAA
TTTGGGATTCGCGCCAAAGTCAAGGTGGCCAAAAACAAAGTGGCGCCACCCTTTCGCATTGCTGAGTTTGACATCATTTT
TGGTAAGGGCATTTCCAATCTCGGCTGCATTCTTGATATGGCCGAGGAAACCGGTGTGATTAGCCGCAAAGGAGCTTGGT
ATTCCTACAACGGCGAAAATCTTGCCCAAGGCCGCGACAACACAATTAAATATATGGAGGAGAACCCTGCCTTTGCCCAA
GAGGTCGAACAGCAGGTGCGGCAAAAGCTAGACCAAGGGGTAGCCGTCTCTGCCAATACGGTGACTCATACCCACGAGGA
AATGGCTGACGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

61.605

99.148

0.611
  recA Acinetobacter baylyi ADP1

61.383

98.58

0.605
  recA Streptococcus pneumoniae TIGR4

59.659

100

0.597
  recA Streptococcus pneumoniae Rx1

59.659

100

0.597
  recA Streptococcus pneumoniae D39

59.659

100

0.597
  recA Streptococcus pneumoniae R6

59.659

100

0.597
  recA Ralstonia pseudosolanacearum GMI1000

63.609

92.898

0.591
  recA Acinetobacter baumannii D1279779

63.497

92.614

0.588
  recA Neisseria gonorrhoeae MS11

62.963

92.045

0.58
  recA Neisseria gonorrhoeae strain FA1090

62.963

92.045

0.58
  recA Neisseria gonorrhoeae MS11

62.963

92.045

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

95.17

0.574
  recA Glaesserella parasuis strain SC1401

61.774

92.898

0.574
  recA Streptococcus mitis NCTC 12261

62.154

92.33

0.574
  recA Streptococcus mitis SK321

62.154

92.33

0.574
  recA Latilactobacillus sakei subsp. sakei 23K

61.212

93.75

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Helicobacter pylori 26695

60.856

92.898

0.565
  recA Helicobacter pylori strain NCTC11637

60.856

92.898

0.565
  recA Streptococcus mutans UA159

60.923

92.33

0.562
  recA Streptococcus pyogenes NZ131

60.55

92.898

0.562
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.633

92.898

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.91

95.17

0.551
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.896

92.614

0.545
  recA Vibrio cholerae strain A1552

58.896

92.614

0.545
  recA Lactococcus lactis subsp. cremoris KW2

59.259

92.045

0.545