Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTO69_RS01920 Genome accession   NZ_CP096199
Coordinates   404579..405625 (+) Length   348 a.a.
NCBI ID   WP_248330649.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 399579..410625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS01905 (MTO69_01905) mutS 399579..402140 (-) 2562 WP_248330631.1 DNA mismatch repair protein MutS -
  MTO69_RS01910 (MTO69_01910) - 402235..403761 (-) 1527 WP_248330633.1 sensor domain-containing diguanylate cyclase -
  MTO69_RS01915 (MTO69_01915) - 403909..404391 (+) 483 WP_248330635.1 nicotinamide-nucleotide amidohydrolase family protein -
  MTO69_RS01920 (MTO69_01920) recA 404579..405625 (+) 1047 WP_248330649.1 recombinase RecA Machinery gene
  MTO69_RS01925 (MTO69_01925) recX 405704..406171 (+) 468 WP_248330651.1 recombination regulator RecX -
  MTO69_RS01930 (MTO69_01930) alaS 406313..408895 (+) 2583 WP_248330653.1 alanine--tRNA ligase -
  MTO69_RS01935 (MTO69_01935) - 409088..410275 (+) 1188 WP_248330655.1 aspartate kinase -
  MTO69_RS01940 (MTO69_01940) csrA 410368..410565 (+) 198 WP_006963114.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37449.95 Da        Isoelectric Point: 4.9554

>NTDB_id=680246 MTO69_RS01920 WP_248330649.1 404579..405625(+) (recA) [Vibrio sinaloensis strain YA2]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLECIA
AAQKQGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGKFLRENPEAAQAIDA
KLREMLLSPAEIQPDDAELGQMPEQEEL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=680246 MTO69_RS01920 WP_248330649.1 404579..405625(+) (recA) [Vibrio sinaloensis strain YA2]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAGATTGAAAAGCAGTTCGGTAAAGGCTCTATTATGCG
TCTTGGCGACAACCGCGCAATGGATGTAGAAACGATTTCTACTGGCTCACTTTCTCTCGATATTGCCCTTGGTGCTGGTG
GTTTGCCGATGGGACGTATTGTTGAAATCTACGGTCCAGAATCTTCAGGTAAAACCACACTGACACTTGAGTGTATCGCC
GCGGCGCAAAAGCAGGGCAAAACCTGTGCCTTTATCGATGCGGAACACGCTCTGGATCCTGTCTATGCTAAAAAACTGGG
TGTCGACATTGATGCACTGCTTGTTTCTCAGCCTGACACGGGTGAACAAGCTCTTGAGATTTGTGACGCATTAGCACGCT
CTGGCGCTATCGACGTGATGGTAGTTGACTCGGTTGCAGCGCTGACTCCTAAGGCTGAAATTGAAGGTGAGATGGGCGAT
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCTCAAGCCATGCGTAAGCTGACGGGTAACCTCAAGCAATCGAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACCACAGGTGGTAACGCAC
TTAAGTTCTATGCGTCTGTTCGCCTTGATATTCGTCGTACTGGCTCAATCAAAGAAGGTGACGAAGTGGTGGGTAACGAA
ACCCGCATCAAAGTGGTGAAGAACAAAATTGCCGCTCCATTTAAACAAGCTGAAACGCAAATCATGTACGGTCAAGGCTT
TAACCGCGAAGGTGAGCTTATCGATCTCGGTGTGAAACACAAACTGATTGAGAAAGCAGGTGCATGGTACAGCTACAATG
GCGATAAGATTGGTCAAGGTAAAGCGAATGCAGGCAAGTTCCTGCGTGAAAACCCAGAAGCGGCACAAGCTATCGATGCT
AAATTACGTGAAATGCTGCTTTCGCCTGCGGAAATTCAGCCTGACGATGCTGAATTAGGCCAAATGCCAGAGCAAGAAGA
GCTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

88.385

100

0.897
  recA Vibrio cholerae strain A1552

88.385

100

0.897
  recA Acinetobacter baumannii D1279779

72.141

97.989

0.707
  recA Pseudomonas stutzeri DSM 10701

75.229

93.966

0.707
  recA Acinetobacter baylyi ADP1

73.574

95.69

0.704
  recA Glaesserella parasuis strain SC1401

71.166

93.678

0.667
  recA Neisseria gonorrhoeae MS11

70.552

93.678

0.661
  recA Neisseria gonorrhoeae MS11

70.552

93.678

0.661
  recA Neisseria gonorrhoeae strain FA1090

70.552

93.678

0.661
  recA Ralstonia pseudosolanacearum GMI1000

72.026

89.368

0.644
  recA Streptococcus pneumoniae TIGR4

59.429

100

0.598
  recA Streptococcus pneumoniae R6

59.429

100

0.598
  recA Streptococcus pneumoniae D39

59.429

100

0.598
  recA Streptococcus pneumoniae Rx1

59.429

100

0.598
  recA Helicobacter pylori 26695

61.791

96.264

0.595
  recA Helicobacter pylori strain NCTC11637

61.493

96.264

0.592
  recA Streptococcus mutans UA159

59.026

100

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.577

91.667

0.592
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

95.115

0.578
  recA Streptococcus mitis NCTC 12261

61.92

92.816

0.575
  recA Streptococcus mitis SK321

61.92

92.816

0.575
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.776

91.092

0.572
  recA Lactococcus lactis subsp. cremoris KW2

58.982

95.977

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.059

92.241

0.563