Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGT36_RS06620 Genome accession   NZ_CP096184
Coordinates   1367366..1368451 (-) Length   361 a.a.
NCBI ID   WP_226096624.1    Uniprot ID   -
Organism   Demequina sp. TMPB413     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1362366..1373451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGT36_RS06600 (LGT36_006600) miaA 1362915..1363865 (-) 951 WP_226096628.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LGT36_RS06605 (LGT36_006605) miaB 1363862..1365352 (-) 1491 WP_226096627.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LGT36_RS06610 (LGT36_006610) rny 1365358..1366821 (-) 1464 WP_226096626.1 ribonuclease Y -
  LGT36_RS06615 (LGT36_006615) - 1366833..1367348 (-) 516 WP_226096625.1 regulatory protein RecX -
  LGT36_RS06620 (LGT36_006620) recA 1367366..1368451 (-) 1086 WP_226096624.1 recombinase RecA Machinery gene
  LGT36_RS06625 (LGT36_006625) - 1368647..1368880 (-) 234 WP_226096623.1 DUF3046 domain-containing protein -
  LGT36_RS06630 (LGT36_006630) - 1368887..1369213 (-) 327 WP_226096622.1 helix-turn-helix domain-containing protein -
  LGT36_RS06635 (LGT36_006635) - 1369299..1369781 (-) 483 WP_226096621.1 CinA family protein -
  LGT36_RS06640 (LGT36_006640) pgsA 1369771..1370382 (-) 612 WP_226096620.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LGT36_RS06645 (LGT36_006645) - 1370421..1372703 (-) 2283 WP_226096619.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38136.58 Da        Isoelectric Point: 5.3334

>NTDB_id=680207 LGT36_RS06620 WP_226096624.1 1367366..1368451(-) (recA) [Demequina sp. TMPB413]
MAQAADRSKALEAALGQIDRQFGKGSAMRLGDSERVAIATIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHA
VANAQAAGGVAAFIDAEHALDPEYAKKLGVDIDNLIVSQPDTGEQALEIADILIRSGGVDILVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKITGAISHTGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRLDVRRIETLKEGTEPVG
NRTRIKVVKNKLAPPFKQAEFDIMYGLGISKEGGIIDMGVEHGFVKKSGAWYTYEGDQLGQGKENSRQFLKDNPALRDEI
EKKVKDKLGVGVPVPADLAAIDVEADAKALEAALAKEESAL

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=680207 LGT36_RS06620 WP_226096624.1 1367366..1368451(-) (recA) [Demequina sp. TMPB413]
ATGGCACAGGCAGCGGACCGCTCCAAGGCACTCGAGGCCGCACTGGGGCAGATTGATAGGCAGTTCGGCAAGGGCTCGGC
GATGCGCCTTGGTGACTCCGAGCGGGTGGCGATCGCTACGATCCCCACGGGGTCTATCGCTCTGGACGTCGCGCTCGGCA
TCGGCGGGCTCCCGCGAGGTCGTGTCGTGGAGATCTACGGCCCTGAGTCCTCCGGAAAGACGACGGTGGCGTTGCACGCC
GTCGCAAATGCTCAGGCGGCTGGCGGTGTAGCGGCCTTCATCGACGCCGAACACGCCCTTGATCCCGAGTACGCCAAGAA
GTTGGGCGTGGACATCGACAACCTGATCGTGTCACAGCCGGACACAGGTGAGCAGGCGCTTGAGATTGCTGACATCTTGA
TCCGCTCCGGCGGCGTTGACATTCTGGTCATCGACTCAGTGGCAGCACTTGTGCCGAAGGCCGAGATCGAAGGCGAGATG
GGAGACAGCCACGTCGGTCTGCAGGCGCGCCTGATGTCCCAGGCGCTACGCAAGATCACCGGCGCCATCTCGCACACGGG
CACCACGGCCATCTTCATTAACCAGTTGCGAGAGAAGATCGGCGTCTTCTTTGGTTCGCCCGAGACCACCACCGGCGGTA
AGGCTCTCAAGTTCTATGCTTCCGTTCGCCTCGATGTACGGCGAATCGAGACGCTCAAGGAAGGCACAGAGCCCGTCGGC
AACCGCACGCGCATCAAGGTGGTCAAGAACAAGTTGGCGCCGCCGTTTAAGCAGGCCGAGTTCGACATCATGTACGGCCT
TGGAATCTCGAAGGAGGGCGGGATCATCGACATGGGCGTCGAGCACGGTTTCGTGAAGAAGTCCGGTGCTTGGTACACCT
ACGAAGGTGATCAGTTGGGTCAGGGCAAGGAGAACTCGCGCCAGTTCCTGAAGGACAACCCTGCTCTTCGTGACGAGATC
GAGAAGAAGGTCAAGGACAAGCTGGGCGTTGGAGTTCCTGTTCCCGCTGACCTGGCGGCGATCGACGTCGAGGCAGACGC
GAAGGCCCTTGAGGCCGCATTGGCCAAAGAGGAGTCCGCTCTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

65.116

95.291

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

67.791

90.305

0.612
  recA Ralstonia pseudosolanacearum GMI1000

66.869

91.136

0.609
  recA Neisseria gonorrhoeae MS11

65.644

90.305

0.593
  recA Neisseria gonorrhoeae strain FA1090

65.644

90.305

0.593
  recA Neisseria gonorrhoeae MS11

65.644

90.305

0.593
  recA Helicobacter pylori strain NCTC11637

62.832

93.906

0.59
  recA Helicobacter pylori 26695

62.832

93.906

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.944

89.474

0.59
  recA Vibrio cholerae strain A1552

65.944

89.474

0.59
  recA Acinetobacter baylyi ADP1

65.015

89.474

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

64.308

90.028

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

90.305

0.579
  recA Acinetobacter baumannii D1279779

64.396

89.474

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.918

91.136

0.573
  recA Lactococcus lactis subsp. cremoris KW2

63.385

90.028

0.571
  recA Streptococcus pneumoniae Rx1

61.212

91.413

0.56
  recA Streptococcus pneumoniae D39

61.212

91.413

0.56
  recA Streptococcus pneumoniae R6

61.212

91.413

0.56
  recA Streptococcus pneumoniae TIGR4

61.212

91.413

0.56
  recA Streptococcus mitis NCTC 12261

61.212

91.413

0.56
  recA Streptococcus mitis SK321

60.909

91.413

0.557
  recA Streptococcus pyogenes NZ131

60.671

90.859

0.551
  recA Glaesserella parasuis strain SC1401

61.491

89.197

0.548
  recA Streptococcus mutans UA159

60.182

91.136

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.075

89.197

0.518