Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   M0D46_RS20625 Genome accession   NZ_CP096143
Coordinates   4960277..4961311 (-) Length   344 a.a.
NCBI ID   WP_101364710.1    Uniprot ID   A0A2N3RFB6
Organism   Xanthomonas prunicola strain CIX97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4955277..4966311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D46_RS20610 (M0D46_20570) csrA 4956399..4956611 (-) 213 WP_252163278.1 carbon storage regulator CsrA -
  M0D46_RS20615 (M0D46_20575) alaS 4956751..4959399 (-) 2649 WP_260814265.1 alanine--tRNA ligase -
  M0D46_RS20620 (M0D46_20580) recX 4959501..4959989 (-) 489 WP_101364712.1 recombination regulator RecX -
  M0D46_RS20625 (M0D46_20585) recA 4960277..4961311 (-) 1035 WP_101364710.1 recombinase RecA Machinery gene
  M0D46_RS20630 (M0D46_20590) lexA 4961484..4962125 (-) 642 WP_252164933.1 transcriptional repressor LexA -
  M0D46_RS20635 (M0D46_20595) ubiB 4962214..4963890 (-) 1677 WP_252163280.1 2-polyprenylphenol 6-hydroxylase -
  M0D46_RS20640 (M0D46_20600) - 4964363..4964857 (-) 495 WP_252163281.1 CinA family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37246.84 Da        Isoelectric Point: 5.0737

>NTDB_id=679695 M0D46_RS20625 WP_101364710.1 4960277..4961311(-) (recA) [Xanthomonas prunicola strain CIX97]
MDENKKRALSAALSQIEKQFGKGSVMRMGDRVIEAVEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSSSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVVFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVEAKLVDKAGAWYSYGDERIGQGKDNARTYLRDNPQVAVRL
EAELREKFQPSEAPREAGDDEEKE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=679695 M0D46_RS20625 WP_101364710.1 4960277..4961311(-) (recA) [Xanthomonas prunicola strain CIX97]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGAGCCAGATCGAAAAGCAATTCGGCAAAGGCTCGGTCATGCG
CATGGGCGACCGTGTCATCGAAGCGGTCGAAGTCATTCCGACCGGCTCGCTGATGCTGGATATCGCTCTGGGGATTGGCG
GCCTGCCCAAGGGTCGCGTAGTCGAAATCTATGGGCCGGAATCCTCGGGCAAGACCACCCTGACACTGCAGGCGATTGCC
CAGTGTCAGAAGCTGGGCGGCACCGCAGCCTTCATCGATGCCGAGCACGCGCTGGACCCGATCTATGCGGCCAAGCTGGG
TGTCAACGTCGACGATCTGCTGCTGTCGCAGCCGGATACCGGCGAGCAGGCATTGGAAATTGCCGACATGCTGGTGCGTT
CGAGCTCGGTGGACATCGTGGTGATTGACTCGGTTGCCGCGCTGACCCCGAAAGCAGAAATCGAAGGCGAAATGGGCGAC
CAGCTGCCGGGCCTGCAGGCTCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACGCT
GGTGGTCTTCATCAATCAGCTGCGTATGAAGATCGGCGTCATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ATGCGCTGAAGTTCTACGCTTCGGTACGTCTGGACATTCGTCGTATCGGCGCAATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAATAAGTTGGCGCCTCCGTTCAAGCAGGTCGTGACCGAAATCCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAACTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGACAAAGCCGGCGCCTGGTATAGCT
ACGGCGATGAGCGCATCGGGCAGGGCAAGGACAACGCGCGCACCTACCTGCGCGATAACCCGCAGGTTGCTGTCCGGCTG
GAAGCCGAGCTGCGTGAGAAGTTCCAGCCTTCCGAAGCGCCGCGTGAAGCCGGCGATGACGAAGAGAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N3RFB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.058

100

0.701
  recA Pseudomonas stutzeri DSM 10701

70.326

97.965

0.689
  recA Ralstonia pseudosolanacearum GMI1000

75.399

90.988

0.686
  recA Acinetobacter baumannii D1279779

71.646

95.349

0.683
  recA Vibrio cholerae strain A1552

70.245

94.767

0.666
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.245

94.767

0.666
  recA Glaesserella parasuis strain SC1401

64.826

100

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae MS11

68.405

94.767

0.648
  recA Neisseria gonorrhoeae strain FA1090

68.405

94.767

0.648
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

61.677

97.093

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.353

92.151

0.593
  recA Helicobacter pylori strain NCTC11637

60.843

96.512

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

61.846

94.477

0.584
  recA Helicobacter pylori 26695

60.542

96.512

0.584
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus mitis NCTC 12261

60.671

95.349

0.578
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.385

94.477

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

94.767

0.555