Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MZO21_RS07175 Genome accession   NZ_CP096120
Coordinates   1437699..1438739 (+) Length   346 a.a.
NCBI ID   WP_248102633.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432699..1443739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS07140 (MZO21_07140) - 1432946..1433611 (-) 666 WP_248102624.1 nucleoside-diphosphate sugar epimerase -
  MZO21_RS07145 (MZO21_07145) rpsT 1433827..1434093 (+) 267 WP_004696602.1 30S ribosomal protein S20 -
  MZO21_RS07150 (MZO21_07150) - 1434284..1434724 (+) 441 WP_154772914.1 hypothetical protein -
  MZO21_RS07155 (MZO21_07155) - 1434767..1435516 (-) 750 WP_154772915.1 phosphoglycerate mutase family protein -
  MZO21_RS07160 (MZO21_07160) - 1435568..1436419 (-) 852 WP_248102627.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MZO21_RS07165 (MZO21_07165) - 1436435..1437121 (+) 687 WP_248102630.1 HAD-IA family hydrolase -
  MZO21_RS07170 (MZO21_07170) - 1437114..1437554 (+) 441 WP_154772918.1 S4 domain-containing protein -
  MZO21_RS07175 (MZO21_07175) recA 1437699..1438739 (+) 1041 WP_248102633.1 recombinase RecA Machinery gene
  MZO21_RS07180 (MZO21_07180) - 1438842..1439456 (+) 615 WP_248102636.1 regulatory protein RecX -
  MZO21_RS07190 (MZO21_07190) - 1439897..1440707 (+) 811 Protein_1389 YbgF trimerization domain-containing protein -
  MZO21_RS07195 (MZO21_07195) lpxA 1440754..1441542 (-) 789 WP_248102639.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  MZO21_RS07200 (MZO21_07200) fabZ 1441545..1442024 (-) 480 WP_248102663.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MZO21_RS07205 (MZO21_07205) lpxD 1442030..1443103 (-) 1074 WP_248102642.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  MZO21_RS07210 (MZO21_07210) - 1443107..1443592 (-) 486 WP_248102645.1 OmpH family outer membrane protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37487.96 Da        Isoelectric Point: 4.9373

>NTDB_id=679570 MZO21_RS07175 WP_248102633.1 1437699..1438739(+) (recA) [Acinetobacter portensis strain JNE5]
MDENKGKALNAALSQIEKQFGKNTIMRLGDNAVQAVEAISTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRVGQVKEGDEIVGSE
TKVKVVKNKMAPPFREALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEEHKELAATIEK
LVRDQLLTLGTVVEDTDEQEPDLLDA

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=679570 MZO21_RS07175 WP_248102633.1 1437699..1438739(+) (recA) [Acinetobacter portensis strain JNE5]
ATGGATGAGAATAAAGGTAAAGCGCTGAATGCTGCACTTAGCCAAATTGAAAAACAATTTGGTAAGAACACAATTATGCG
TTTGGGTGATAATGCTGTACAAGCTGTAGAAGCAATCTCAACAGGTTCTTTGACTCTTGATATCGCACTTGGTATTGGCG
GCTTACCTAAAGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACAATGACATTACAAGCGATTGCT
GAATGTCAAAAAGCTGGTGGTACATGTGCTTTCATCGATGCAGAACATGCACTTGATCCGCAATATGCACGTAAACTTGG
CGTAGATATCGACAATTTACTTGTTTCTCAACCAGATAACGGTGAACAAGCGCTTGAAATTGCAGATATGCTTGTTCGCT
CTGGCGCAATCGACATGATCGTTGTCGATTCTGTAGCTGCACTTACTCCTCGTGCGGAAATTGAAGGCGAAATGGGCGAC
TCTCACATGGGTCTACAAGCGCGTTTAATGAGCCAAGCGCTACGTAAAATTACAGGTAATGCAAAGCGTTCTAACTGTAT
GGTGATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAGCCCAGAAACAACAACTGGTGGTAACGCAC
TAAAATTCTATGCTTCTGTACGTCTTGATATCCGTCGTGTTGGTCAAGTAAAAGAAGGTGATGAAATTGTTGGTTCTGAA
ACAAAAGTTAAAGTTGTTAAGAACAAAATGGCTCCTCCTTTCCGTGAAGCATTATTCCAAATTCTTTATGGTAAAGGCGT
AAACCATCTTGGTGAACTTATCGACCTTGCTGTTCAACAAGAAATTGTTCAAAAAGCAGGTGCTTGGTATTCATATCAAG
GCGACAAAATTGGTCAAGGTAAAAACAACACTATTCGCTACTTAGAAGAACATAAAGAATTAGCCGCAACAATTGAAAAA
TTAGTTCGCGATCAACTTCTTACACTAGGTACTGTTGTAGAAGATACAGATGAGCAAGAACCTGATCTTTTAGATGCTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

89.017

100

0.89
  recA Acinetobacter baylyi ADP1

87.966

100

0.887
  recA Pseudomonas stutzeri DSM 10701

73.699

100

0.737
  recA Vibrio cholerae strain A1552

74.695

94.798

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.695

94.798

0.708
  recA Glaesserella parasuis strain SC1401

71.296

93.642

0.668
  recA Ralstonia pseudosolanacearum GMI1000

72.99

89.884

0.656
  recA Neisseria gonorrhoeae MS11

64.943

100

0.653
  recA Neisseria gonorrhoeae MS11

64.943

100

0.653
  recA Neisseria gonorrhoeae strain FA1090

64.943

100

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

98.266

0.616
  recA Helicobacter pylori strain NCTC11637

63.914

94.509

0.604
  recA Helicobacter pylori 26695

63.609

94.509

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.236

95.665

0.595
  recA Streptococcus mutans UA159

59.767

99.133

0.592
  recA Streptococcus pneumoniae D39

62.963

93.642

0.59
  recA Streptococcus pneumoniae R6

62.963

93.642

0.59
  recA Streptococcus pneumoniae TIGR4

62.963

93.642

0.59
  recA Streptococcus pneumoniae Rx1

62.963

93.642

0.59
  recA Streptococcus mitis SK321

62.346

93.642

0.584
  recA Streptococcus mitis NCTC 12261

62.037

93.642

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

94.22

0.581
  recA Streptococcus pyogenes NZ131

61.35

94.22

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.264

91.908

0.572
  recA Lactococcus lactis subsp. cremoris KW2

59.502

92.775

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

60.127

91.329

0.549