Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MZV50_RS08245 Genome accession   NZ_CP096040
Coordinates   1692784..1693854 (+) Length   356 a.a.
NCBI ID   WP_252633928.1    Uniprot ID   -
Organism   Caulobacter segnis strain RL271     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1687784..1698854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZV50_RS08225 (MZV50_08220) - 1687862..1688386 (-) 525 WP_252633924.1 GNAT family N-acetyltransferase -
  MZV50_RS08230 (MZV50_08225) - 1688458..1688835 (+) 378 WP_252633925.1 nuclear transport factor 2 family protein -
  MZV50_RS08235 (MZV50_08230) - 1689046..1690869 (+) 1824 WP_252633926.1 DUF885 family protein -
  MZV50_RS08240 (MZV50_08235) - 1690918..1692522 (-) 1605 WP_252633927.1 EAL domain-containing protein -
  MZV50_RS08245 (MZV50_08240) recA 1692784..1693854 (+) 1071 WP_252633928.1 recombinase RecA Machinery gene
  MZV50_RS08250 (MZV50_08245) alaS 1694272..1696917 (+) 2646 WP_252633929.1 alanine--tRNA ligase -
  MZV50_RS08255 (MZV50_08250) - 1697041..1697553 (+) 513 WP_252633930.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37900.26 Da        Isoelectric Point: 5.3550

>NTDB_id=679340 MZV50_RS08245 WP_252633928.1 1692784..1693854(+) (recA) [Caulobacter segnis strain RL271]
MTSQAALKLVGKEEGDKQRALEAALAQIDRAFGKGSVMKLGEKGKVEIESVSTGSLGLDIALGIGGLPKGRIIEVYGPES
SGKTTLALHVVAEVQKAGGTAAFVDAEHALDPGYAHKLGVNLDNLLVSQPDNGEQALEITDTLVRSGAVDIVVIDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTGSINKANTIVIFINQIRHKIGVMYGSPETTTGGNALKFYASVRLDIRRTG
SVKVRDEIIGNNVRVKVVKNKVAPPFREVEFDIMYGEGISKLGEVIDLGVKAGIIDKAGSWFSYGSQRIGQGRDNVREFL
KTNPDVAADIEKAVRKSSQKIEEELLVGGPEDGEEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=679340 MZV50_RS08245 WP_252633928.1 1692784..1693854(+) (recA) [Caulobacter segnis strain RL271]
ATGACCAGTCAGGCGGCTTTGAAACTCGTGGGCAAGGAAGAAGGCGACAAGCAACGCGCGCTAGAGGCGGCTCTCGCCCA
GATCGACCGCGCGTTCGGCAAGGGCTCGGTGATGAAGCTGGGCGAGAAGGGCAAGGTCGAGATCGAGTCGGTCTCCACCG
GTTCGCTCGGTCTGGATATCGCCCTGGGCATCGGCGGCCTGCCCAAGGGCCGGATCATCGAGGTCTACGGTCCGGAAAGC
TCGGGCAAGACCACCCTGGCCCTCCACGTGGTGGCTGAGGTTCAGAAGGCCGGTGGCACCGCCGCCTTCGTCGACGCCGA
GCACGCGCTGGATCCGGGTTACGCCCACAAGCTGGGCGTGAATCTCGACAACCTGCTGGTCTCGCAGCCCGACAACGGCG
AACAGGCCCTGGAGATCACCGACACCCTGGTGCGTTCGGGCGCTGTCGACATCGTCGTGATCGACTCGGTCGCGGCCCTG
ACTCCGAAGGCCGAAATCGAAGGCGAGATGGGCGATAGCCTGCCGGGCCTTCAAGCTCGCCTGATGAGCCAGGCGCTGCG
CAAGCTGACCGGTTCGATCAACAAGGCCAACACCATTGTCATCTTCATCAACCAGATCCGTCACAAGATCGGGGTGATGT
ACGGCAGCCCGGAAACGACCACGGGCGGCAACGCGCTGAAATTCTACGCGTCGGTGCGCCTGGACATCCGCCGTACCGGG
TCGGTCAAGGTCCGCGACGAGATCATCGGCAACAACGTCCGGGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCGTTCCG
CGAGGTCGAGTTCGACATCATGTACGGCGAGGGTATTTCCAAGCTGGGCGAAGTCATCGACCTGGGCGTCAAGGCCGGGA
TCATCGACAAGGCTGGCTCGTGGTTCTCGTACGGCAGCCAGCGTATCGGCCAGGGCCGCGACAATGTCCGCGAGTTCCTG
AAGACCAACCCCGACGTGGCCGCCGACATCGAAAAGGCCGTCCGCAAGTCGTCGCAGAAGATCGAGGAAGAGCTCCTGGT
CGGCGGTCCCGAGGATGGCGAGGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

65.318

97.191

0.635
  recA Glaesserella parasuis strain SC1401

69.782

90.169

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.497

96.067

0.629
  recA Neisseria gonorrhoeae MS11

69.159

90.169

0.624
  recA Neisseria gonorrhoeae MS11

69.159

90.169

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.159

90.169

0.624
  recA Pseudomonas stutzeri DSM 10701

69.375

89.888

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.767

92.978

0.621
  recA Acinetobacter baylyi ADP1

68.536

90.169

0.618
  recA Ralstonia pseudosolanacearum GMI1000

71.197

86.798

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

67.913

90.169

0.612
  recA Helicobacter pylori 26695

66.254

90.73

0.601
  recA Helicobacter pylori strain NCTC11637

65.635

90.73

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

90.169

0.584
  recA Vibrio cholerae strain A1552

64.798

90.169

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

64.062

89.888

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.125

89.888

0.567
  recA Streptococcus mutans UA159

59.118

95.506

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.35

91.573

0.562
  recA Streptococcus pyogenes NZ131

60.423

92.978

0.562
  recA Streptococcus mitis SK321

61.111

91.011

0.556
  recA Streptococcus mitis NCTC 12261

60.494

91.011

0.551
  recA Streptococcus pneumoniae TIGR4

60.185

91.011

0.548
  recA Streptococcus pneumoniae D39

60.185

91.011

0.548
  recA Streptococcus pneumoniae Rx1

60.185

91.011

0.548
  recA Streptococcus pneumoniae R6

60.185

91.011

0.548