Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MY525_RS19130 Genome accession   NZ_CP096018
Coordinates   4217522..4218559 (+) Length   345 a.a.
NCBI ID   WP_250657448.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12817     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4212522..4223559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY525_RS19110 rnhB 4213004..4213633 (+) 630 WP_250657444.1 ribonuclease HII -
  MY525_RS19115 - 4213655..4214110 (+) 456 WP_250657445.1 DUF4124 domain-containing protein -
  MY525_RS19120 fdxA 4214241..4214564 (-) 324 WP_250657446.1 ferredoxin FdxA -
  MY525_RS19125 mutS 4214719..4217319 (-) 2601 WP_250657447.1 DNA mismatch repair protein MutS -
  MY525_RS19130 recA 4217522..4218559 (+) 1038 WP_250657448.1 recombinase RecA Machinery gene
  MY525_RS19135 - 4218917..4219099 (+) 183 WP_250657449.1 hypothetical protein -
  MY525_RS19140 - 4219121..4220302 (-) 1182 WP_250657450.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  MY525_RS19145 fabA 4220550..4221068 (+) 519 WP_250657451.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  MY525_RS19150 - 4221184..4222401 (+) 1218 WP_250657452.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37355.86 Da        Isoelectric Point: 5.3282

>NTDB_id=679209 MY525_RS19130 WP_250657448.1 4217522..4218559(+) (recA) [Alkalimarinus coralli strain SCSIO 12817]
MDDNKKKALTAALSQIERQFGKGAVMKMGDKPREAIPSVSTGSLGLDVALGIGGLPYGRIVEIYGPESSGKTTLTLQVIA
EAQKQGKTCAFVDAEHALDPVYAEKLGVNVDELLVSQPDTGEQALEIADMLVRSGAVEVIVVDSVAALTPKAEIEGEMGD
HHVGLQARLMSQALRKITGNIKNANCLCIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGAVKVGDEIVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMGEVIDMGVKNGFVDKAGAWYSYNGEKIGQGKANSAVYLEEHPEVAAEIEG
KIREKLMPQPQETSEKEDTMEQIEI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=679209 MY525_RS19130 WP_250657448.1 4217522..4218559(+) (recA) [Alkalimarinus coralli strain SCSIO 12817]
ATGGACGATAACAAAAAGAAAGCGCTTACGGCAGCATTATCACAAATTGAAAGACAGTTTGGTAAAGGTGCTGTTATGAA
AATGGGGGATAAACCCCGTGAAGCGATTCCTTCTGTTTCTACAGGGTCTTTGGGCCTGGATGTAGCGTTGGGTATTGGTG
GCTTGCCATATGGGCGTATCGTAGAAATATATGGCCCAGAAAGTTCAGGTAAAACGACCTTGACCTTGCAAGTTATTGCA
GAAGCTCAAAAACAGGGCAAGACCTGTGCGTTTGTCGATGCAGAGCATGCGCTAGACCCTGTTTACGCTGAAAAACTAGG
CGTTAATGTTGATGAACTGCTCGTTTCTCAGCCAGATACTGGTGAGCAGGCACTTGAAATTGCAGATATGCTGGTTCGCT
CAGGGGCAGTAGAGGTTATTGTTGTGGACTCTGTTGCGGCATTGACTCCAAAAGCTGAAATTGAAGGTGAAATGGGTGAT
CATCACGTAGGCTTACAAGCCCGCTTGATGTCCCAGGCACTTCGCAAAATCACCGGTAATATAAAAAATGCGAACTGCCT
ATGTATTTTCATCAACCAAATACGTATGAAAATTGGGGTTATGTTTGGTAACCCTGAAACGACAACCGGTGGTAATGCGC
TTAAATTCTACTCGTCGGTTCGTTTGGACATTCGCCGAACCGGTGCAGTTAAAGTCGGTGATGAGATCGTAGGTAACGAA
ACACGTGTTAAGGTTGTAAAAAACAAGGTTTCTCCTCCGTTTAAGCAGGCCGAGTTCCAAATCATGTATGGCAAAGGTAT
TTACCATATGGGAGAGGTCATCGATATGGGCGTGAAGAACGGTTTTGTTGATAAAGCCGGCGCCTGGTATTCATATAATG
GTGAGAAGATTGGTCAAGGAAAGGCTAACTCTGCTGTTTATCTCGAAGAACACCCAGAGGTTGCCGCTGAAATTGAAGGG
AAGATTCGAGAAAAGCTGATGCCTCAACCACAGGAAACATCTGAAAAAGAAGACACCATGGAGCAAATTGAAATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

82.569

94.783

0.783
  recA Vibrio cholerae strain A1552

71.758

100

0.722
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.758

100

0.722
  recA Acinetobacter baylyi ADP1

72.222

99.13

0.716
  recA Acinetobacter baumannii D1279779

74.618

94.783

0.707
  recA Glaesserella parasuis strain SC1401

72.866

95.072

0.693
  recA Ralstonia pseudosolanacearum GMI1000

70.501

98.261

0.693
  recA Neisseria gonorrhoeae MS11

72.531

93.913

0.681
  recA Neisseria gonorrhoeae MS11

72.531

93.913

0.681
  recA Neisseria gonorrhoeae strain FA1090

72.531

93.913

0.681
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

94.783

0.617
  recA Helicobacter pylori 26695

61.808

99.42

0.614
  recA Helicobacter pylori strain NCTC11637

61.808

99.42

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

96.812

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

93.043

0.594
  recA Streptococcus mutans UA159

57.102

100

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

93.043

0.58
  recA Streptococcus pyogenes NZ131

59.756

95.072

0.568
  recA Streptococcus pneumoniae Rx1

57.988

97.971

0.568
  recA Streptococcus pneumoniae D39

57.988

97.971

0.568
  recA Streptococcus pneumoniae R6

57.988

97.971

0.568
  recA Streptococcus pneumoniae TIGR4

57.988

97.971

0.568
  recA Streptococcus mitis SK321

56.647

100

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

93.913

0.562
  recA Streptococcus mitis NCTC 12261

58.824

93.623

0.551
  recA Lactococcus lactis subsp. cremoris KW2

57.276

93.623

0.536