Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MU856_RS09990 Genome accession   NZ_CP095845
Coordinates   2073136..2074212 (-) Length   358 a.a.
NCBI ID   WP_003050311.1    Uniprot ID   -
Organism   Sphingopyxis sp. GC21     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2068136..2079212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU856_RS09970 - 2070055..2070789 (-) 735 WP_263587471.1 hypothetical protein -
  MU856_RS09975 - 2070898..2071464 (-) 567 WP_238929690.1 hypothetical protein -
  MU856_RS09980 - 2071478..2072101 (-) 624 WP_062902810.1 glutathione S-transferase family protein -
  MU856_RS09985 - 2072114..2072929 (-) 816 WP_263587472.1 agmatinase family protein -
  MU856_RS09990 recA 2073136..2074212 (-) 1077 WP_003050311.1 recombinase RecA Machinery gene
  MU856_RS09995 - 2074335..2074688 (-) 354 WP_062902812.1 response regulator -
  MU856_RS10000 - 2074681..2077080 (-) 2400 WP_062902813.1 response regulator -
  MU856_RS10005 - 2077152..2079203 (-) 2052 WP_263587473.1 M13 family metallopeptidase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38468.98 Da        Isoelectric Point: 5.1798

>NTDB_id=678810 MU856_RS09990 WP_003050311.1 2073136..2074212(-) (recA) [Sphingopyxis sp. GC21]
MAGQLSLVESGKSVNSTDRQKALDAALAQIDRAFGKGSVMKLGSKEAMQVEAVSTGSLGLDIALGVGGLPRGRVIEIYGP
ESSGKTTLALHCIAEAQKTGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEIVDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGQIKDRDEIVGNTTRVKVVKNKVAPPFKQVEFDIMYGQGISKIGEILDLGVKAGLVEKSGAWFSYDSIRIGQGRENAKN
FLTENPELMERLEKAIRSRTDAVAEEMMTGPDADDDDI

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=678810 MU856_RS09990 WP_003050311.1 2073136..2074212(-) (recA) [Sphingopyxis sp. GC21]
ATGGCCGGACAATTATCACTCGTCGAATCGGGGAAATCAGTGAACAGCACAGACAGGCAGAAGGCGCTCGACGCCGCACT
CGCGCAGATCGATCGCGCGTTCGGCAAGGGCTCGGTGATGAAGCTCGGATCGAAGGAAGCGATGCAGGTCGAGGCGGTCT
CGACCGGATCGCTCGGGCTCGACATCGCGCTCGGCGTCGGCGGTCTGCCGCGTGGCCGCGTTATCGAAATCTACGGTCCC
GAAAGCTCGGGCAAGACCACCCTCGCGCTGCATTGCATCGCCGAAGCGCAGAAGACCGGCGGAACCGCGGCTTTCGTCGA
TGCCGAACATGCGCTCGATCCCGTCTATGCGAAGAAGCTGGGCGTAAACATTGACGAGCTGATCGTGTCGCAGCCCGATA
CGGGCGAACAGGCGCTTGAAATCGTCGATACGCTGGTGCGCTCGAATGCGATCGACGTGCTCGTCGTCGACTCGGTCGCG
GCGCTCGTCCCGCGCGCCGAAATCGAAGGCGAGATGGGCGACAGCCATGTCGGCCTTCAGGCGCGCCTGATGTCGCAGAG
CTTGCGCAAACTCACCGGCTCGATCAGCCGTTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGCAATCCCGAGACGACGACGGGCGGCAATGCGCTCAAATTCTACGCCTCGGTCCGCCTCGATATCCGCCGC
ACCGGCCAGATCAAGGACCGCGACGAAATCGTCGGCAACACCACGCGTGTCAAAGTCGTCAAGAACAAGGTCGCGCCCCC
GTTCAAGCAGGTCGAATTCGACATCATGTACGGGCAGGGCATTTCGAAGATCGGCGAAATTCTCGACCTCGGGGTCAAGG
CCGGTCTCGTCGAAAAATCGGGCGCCTGGTTCAGCTATGATTCGATCCGCATCGGTCAGGGCCGCGAAAATGCGAAGAAT
TTCCTGACCGAAAATCCCGAACTGATGGAACGGCTCGAAAAGGCGATCCGCAGCCGCACCGATGCGGTGGCCGAAGAGAT
GATGACCGGCCCCGACGCGGACGACGACGATATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

68.657

93.575

0.642
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.657

93.575

0.642
  recA Pseudomonas stutzeri DSM 10701

67.751

94.413

0.64
  recA Glaesserella parasuis strain SC1401

65.896

96.648

0.637
  recA Neisseria gonorrhoeae MS11

68.519

90.503

0.62
  recA Neisseria gonorrhoeae MS11

68.519

90.503

0.62
  recA Neisseria gonorrhoeae strain FA1090

68.519

90.503

0.62
  recA Acinetobacter baylyi ADP1

64.412

94.972

0.612
  recA Ralstonia pseudosolanacearum GMI1000

70.645

86.592

0.612
  recA Acinetobacter baumannii D1279779

68.012

89.944

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

92.458

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

67.183

90.223

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.717

94.693

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.426

94.413

0.589
  recA Helicobacter pylori strain NCTC11637

62.5

93.855

0.587
  recA Helicobacter pylori 26695

62.202

93.855

0.584
  recA Streptococcus pneumoniae Rx1

60.058

95.81

0.575
  recA Streptococcus pneumoniae D39

60.058

95.81

0.575
  recA Streptococcus pneumoniae R6

60.058

95.81

0.575
  recA Streptococcus pneumoniae TIGR4

60.058

95.81

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.702

91.899

0.567
  recA Streptococcus mitis NCTC 12261

61.846

90.782

0.561
  recA Streptococcus mitis SK321

61.846

90.782

0.561
  recA Streptococcus pyogenes NZ131

61.35

91.061

0.559
  recA Streptococcus mutans UA159

59.459

93.017

0.553
  recA Lactococcus lactis subsp. cremoris KW2

59.692

90.782

0.542