Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MYF86_RS06540 Genome accession   NZ_CP095841
Coordinates   1376184..1377248 (+) Length   354 a.a.
NCBI ID   WP_040068994.1    Uniprot ID   A0A0K0MKD4
Organism   Aeromonas veronii strain AV040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1371184..1382248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF86_RS06525 (MYF86_06525) - 1371830..1372693 (+) 864 WP_247823854.1 patatin family protein -
  MYF86_RS06530 (MYF86_06530) mutS 1372770..1375289 (-) 2520 WP_247824165.1 DNA mismatch repair protein MutS -
  MYF86_RS06535 (MYF86_06535) pncC 1375612..1376103 (+) 492 WP_040068991.1 nicotinamide-nucleotide amidase -
  MYF86_RS06540 (MYF86_06540) recA 1376184..1377248 (+) 1065 WP_040068994.1 recombinase RecA Machinery gene
  MYF86_RS06545 (MYF86_06545) - 1377293..1377802 (+) 510 WP_124928421.1 regulatory protein RecX -
  MYF86_RS06550 (MYF86_06550) alaS 1378098..1380722 (+) 2625 WP_005343004.1 alanine--tRNA ligase -
  MYF86_RS06555 (MYF86_06555) - 1380739..1381977 (+) 1239 WP_005336054.1 aspartate kinase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38003.69 Da        Isoelectric Point: 4.8912

>NTDB_id=678693 MYF86_RS06540 WP_040068994.1 1376184..1377248(+) (recA) [Aeromonas veronii strain AV040]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAGEVEA
RLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=678693 MYF86_RS06540 WP_040068994.1 1376184..1377248(+) (recA) [Aeromonas veronii strain AV040]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCTACCGGTTCCCTCTCGCTGGACGTGGCGCTGGGGATCGGCG
GTCTGCCGTGTGGCCGTATCGTCGAAATCTACGGCCCGGAATCTTCCGGTAAAACTACCCTCACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAACACGCTCTCGACCCTATCTATGCTGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCGGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGGGAGATGGGTGAT
TCCCACGTTGGCCTGCAGGCTCGTCTGATGTCCCAGGCACTGCGCAAGCTGACTGCCAACATCAAGAACGCCAACTGCTT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGTATCGGCGCCATCAAGGAAGGCGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCTGAATTCCAGATCTTCTACGGCGCCGGTAT
CTCCAAAGAGGGCGAGCTGGTGGATCTCGGTGTCAAGCACAAGCTGATCGACAAGGCGGGTGCCTGGTACAGCTACAACG
GTGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTCGCCGAGAACAAGGTGATGGCTGGTGAAGTGGAGGCT
CGTCTGCGCGAGCTGCTGCTCTCCGGCGCAGTGCCTGTCGATGACAAGGCTGCACCGGTTGAGGCAGAAGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MKD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.724

98.305

0.754
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.655

0.729
  recA Vibrio cholerae strain A1552

78.659

92.655

0.729
  recA Acinetobacter baumannii D1279779

72.886

96.893

0.706
  recA Acinetobacter baylyi ADP1

72.674

97.175

0.706
  recA Glaesserella parasuis strain SC1401

70.255

99.718

0.701
  recA Ralstonia pseudosolanacearum GMI1000

72.644

92.938

0.675
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.09

0.661
  recA Helicobacter pylori strain NCTC11637

61.383

98.023

0.602
  recA Helicobacter pylori 26695

60.807

98.023

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.503

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

60.725

93.503

0.568
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.655

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Streptococcus pyogenes NZ131

60.062

91.243

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.243

0.528