Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG241_RS18405 Genome accession   NZ_CP109551
Coordinates   4117540..4119273 (+) Length   577 a.a.
NCBI ID   WP_405816574.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01390     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4112540..4124273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG241_RS18375 (OG241_18365) - 4113196..4113867 (+) 672 WP_143606564.1 recombinase family protein -
  OG241_RS18395 (OG241_18385) - 4115400..4115705 (+) 306 WP_405816571.1 YtxH domain-containing protein -
  OG241_RS18400 (OG241_18390) - 4115835..4117295 (+) 1461 WP_405816573.1 FGGY family carbohydrate kinase -
  OG241_RS18405 (OG241_18395) rcrP 4117540..4119273 (+) 1734 WP_405816574.1 ABC transporter ATP-binding protein Regulator
  OG241_RS18410 (OG241_18400) rcrQ 4119273..4121207 (+) 1935 WP_405816575.1 ABC transporter ATP-binding protein Regulator
  OG241_RS18415 (OG241_18405) - 4121347..4122768 (-) 1422 WP_405816576.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62450.92 Da        Isoelectric Point: 7.0894

>NTDB_id=678488 OG241_RS18405 WP_405816574.1 4117540..4119273(+) (rcrP) [Streptomyces sp. NBC_01390]
MLIRLLRTYLRPYKKPIGLLVLLQLLQTCATLYLPTLNADIIDKGVVKGDTGYILLSGAVMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKERFGKANHELTEVSLGTGRLLAL
MFPIVMTVVNISSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLATSSSVVP
PTAPVVELRRHGHLEIRGAGFHYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATAGEVLVDGVDVA
TVEPRLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWRALEVAQGKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGRHHELMADN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=678488 OG241_RS18405 WP_405816574.1 4117540..4119273(+) (rcrP) [Streptomyces sp. NBC_01390]
GTGCTCATACGACTTCTGCGCACTTATCTGAGGCCCTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACCCTGTACCTGCCCACGCTCAACGCGGACATCATCGACAAGGGTGTGGTGAAGGGCGACACCGGCTACA
TCCTGCTCTCCGGTGCCGTGATGATCGGTATCTCGCTGGTGCAGGTCGTCTGCAACATCGGCGCCGTGTACTACGGCGCC
CGTACGGCGTCGGCGCTCGGCCGGGACGTACGTGCCGCCGTCTTCGACCGCGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
GCAGTTCGGCGCGCCCTCGCTGATCACGCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTCGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCGCTGGGGCTGGATGTGCCGCTGTCGGGCGTG
CTCGTCGCCGTCGTCCCGGTGCTGGGCATCTGCGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGTACGGCTCGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGTGCCTTCGTGCGGGACG
AGTACGAGAAGGAGCGGTTCGGGAAGGCGAACCACGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGCTGCTCGCACTG
ATGTTCCCGATCGTCATGACCGTCGTCAACATCTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCATCGCATCGACAGCGG
CGGTATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGCGACGTCGTCGAGCGTCGTCCCG
CCGACCGCTCCCGTGGTGGAGCTGCGGCGGCACGGGCATCTGGAGATCCGCGGGGCCGGGTTCCACTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTGGTGGCGCGGCCCGGTGAGGTGACCGCGGTGATCGGGTCCACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACCGCCGGAGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACGGTGGAGCCGAGGCTGCTGGCCAGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCCGGGACCGTGGCGAG
CAATCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCGGGCGCTGGAGGTCGCGCAGGGCAAGGGGTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGGACGAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTCCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCCCTGCGGACGGCGCTCGCGCGCGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACGATCA
GGGAGGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGCCATCACGAGCTGATGGCGGACAAC
CAGACCTATCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.591

100

0.399