Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L2Y94_RS15205 Genome accession   NZ_CP095740
Coordinates   3374036..3375079 (-) Length   347 a.a.
NCBI ID   WP_144909928.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3369036..3380079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS15190 (L2Y94_15190) csrA 3370345..3370542 (-) 198 WP_144909934.1 carbon storage regulator CsrA -
  L2Y94_RS15195 (L2Y94_15195) alaS 3370846..3373479 (-) 2634 WP_247368242.1 alanine--tRNA ligase -
  L2Y94_RS15200 (L2Y94_15200) - 3373543..3374055 (-) 513 WP_247368244.1 regulatory protein RecX -
  L2Y94_RS15205 (L2Y94_15205) recA 3374036..3375079 (-) 1044 WP_144909928.1 recombinase RecA Machinery gene
  L2Y94_RS15210 (L2Y94_15210) - 3375178..3375687 (-) 510 WP_247368248.1 CinA family protein -
  L2Y94_RS15215 (L2Y94_15215) - 3376899..3377318 (+) 420 WP_247368251.1 hypothetical protein -
  L2Y94_RS15220 (L2Y94_15220) - 3377332..3378288 (+) 957 WP_247368253.1 type IV secretion system protein -
  L2Y94_RS15225 (L2Y94_15225) - 3378396..3379112 (+) 717 WP_247375270.1 TrbG/VirB9 family P-type conjugative transfer protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37309.43 Da        Isoelectric Point: 5.1942

>NTDB_id=677961 L2Y94_RS15205 WP_144909928.1 3374036..3375079(-) (recA) [Luteibacter aegosomatis strain 321]
MDDNKRKALASALGQIEKQFGKGAVMRLGDRVDDQIDTVSTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLTLQAIA
SCQRNGGTAAFVDAEHALDPSYAEKLGVNVADLLVSQPDTGEQALEIADMLVRSGAVDLVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGEEVIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVRENLIDKSGAWYSYKGDRIGQGKENVRQFLRDNPAIANEIDT
ELRARLLVKPGAKSSADDTEQDAVEEA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=677961 L2Y94_RS15205 WP_144909928.1 3374036..3375079(-) (recA) [Luteibacter aegosomatis strain 321]
ATGGACGACAACAAGCGCAAGGCGCTGGCCAGCGCCCTTGGCCAGATCGAGAAGCAGTTCGGCAAGGGCGCCGTGATGCG
TCTGGGCGATCGCGTCGACGACCAGATCGATACCGTGTCGACGGGTTCCCTCGGCCTGGATATCGCGCTGGGTATCGGCG
GCCTGCCGCGTGGCCGTATCGTCGAGATCTATGGGCCGGAGTCGTCCGGTAAAACCACCCTGACGTTGCAGGCCATCGCT
TCGTGCCAGCGCAACGGCGGCACCGCCGCCTTCGTCGATGCCGAACACGCCCTCGACCCGTCCTATGCCGAAAAACTCGG
CGTCAACGTCGCCGACCTGCTGGTCAGCCAGCCGGATACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGCGTT
CCGGCGCGGTCGACCTCGTGGTGGTCGACTCCGTGGCGGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACGGCAAATATCAAGAAATCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGTAGCCCGGAAACCACCACCGGCGGTAACGCCC
TCAAGTTCTACGCCTCGGTGCGCCTAGACATCCGCCGCATCGGTGCGGTCAAGAAGGGTGAAGAGGTCATCGGCTCGGAA
ACCCGGGTGAAGGTGGTGAAGAACAAGGTGGCTCCGCCGTTCCGCCAGACCGAATTCGAGATCCTCTACGGCGAGGGTAC
CTCGCGCGAAGGCGAGATCATCGAGCTGGGCGTGCGCGAAAACCTCATCGACAAGTCGGGTGCGTGGTACAGCTACAAGG
GTGACCGCATCGGCCAGGGCAAGGAAAACGTCCGCCAGTTCCTACGCGACAATCCGGCCATCGCCAACGAGATCGACACC
GAACTGCGCGCTCGCCTGCTGGTGAAGCCGGGCGCCAAGTCTTCGGCCGACGACACCGAGCAGGATGCGGTCGAAGAAGC
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.659

94.524

0.744
  recA Acinetobacter baylyi ADP1

73.178

98.847

0.723
  recA Ralstonia pseudosolanacearum GMI1000

70.455

100

0.715
  recA Acinetobacter baumannii D1279779

70.774

100

0.712
  recA Vibrio cholerae strain A1552

69.886

100

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.886

100

0.709
  recA Neisseria gonorrhoeae MS11

74.154

93.66

0.695
  recA Neisseria gonorrhoeae MS11

74.154

93.66

0.695
  recA Neisseria gonorrhoeae strain FA1090

74.154

93.66

0.695
  recA Glaesserella parasuis strain SC1401

68.3

100

0.683
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.782

97.695

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.269

96.254

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.875

92.219

0.617
  recA Helicobacter pylori strain NCTC11637

65.432

93.372

0.611
  recA Helicobacter pylori 26695

65.123

93.372

0.608
  recA Streptococcus mitis NCTC 12261

59.143

100

0.597
  recA Streptococcus mitis SK321

58.857

100

0.594
  recA Streptococcus mutans UA159

62.691

94.236

0.591
  recA Streptococcus pneumoniae Rx1

59.706

97.983

0.585
  recA Streptococcus pneumoniae D39

59.706

97.983

0.585
  recA Streptococcus pneumoniae R6

59.706

97.983

0.585
  recA Streptococcus pneumoniae TIGR4

59.706

97.983

0.585
  recA Streptococcus pyogenes NZ131

61.585

94.524

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

62.422

92.795

0.579
  recA Lactococcus lactis subsp. cremoris KW2

59.938

92.795

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

93.372

0.548