Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGT41_RS11980 Genome accession   NZ_CP095732
Coordinates   2403190..2404266 (+) Length   358 a.a.
NCBI ID   WP_420720186.1    Uniprot ID   -
Organism   Abyssibius alkaniclasticus strain 960558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2398190..2409266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGT41_RS11965 (LGT41_0011945) - 2399423..2399848 (+) 426 WP_274127111.1 MAPEG family protein -
  LGT41_RS11970 (LGT41_0011950) - 2399845..2401023 (+) 1179 WP_274129723.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LGT41_RS11975 (LGT41_0011955) - 2401130..2403031 (+) 1902 WP_274127112.1 ATP-binding protein -
  LGT41_RS11980 (LGT41_0011960) recA 2403190..2404266 (+) 1077 WP_420720186.1 recombinase RecA Machinery gene
  LGT41_RS11985 (LGT41_0011965) alaS 2404394..2407051 (+) 2658 WP_274127113.1 alanine--tRNA ligase -
  LGT41_RS11990 (LGT41_0011970) - 2407048..2407335 (+) 288 WP_274127114.1 DUF1330 domain-containing protein -
  LGT41_RS11995 (LGT41_0011975) - 2407337..2407621 (+) 285 WP_274127115.1 DUF1330 domain-containing protein -
  LGT41_RS12000 (LGT41_0011980) - 2407752..2408729 (-) 978 WP_274127116.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38497.08 Da        Isoelectric Point: 4.8950

>NTDB_id=677776 LGT41_RS11980 WP_420720186.1 2403190..2404266(+) (recA) [Abyssibius alkaniclasticus strain 960558]
MAQSVLDLGERRQMDKEKALESALSQIERSFGKGSIMRLGANSPVMDIAAISTGSIGLDIALGIGGLPRGRIIEIYGPES
SGKTTLALHVLAEEQKNGGICAFVDAEHALDPQYAKKLGVNLDELLISQPDAGEQALEITETLVRSGAVSVVVVDSVAAL
TPKSELEGDMGDHQVGAQARLMSQAMRKLTAAISRSKCMVIFINQIRMKIGVMFGSPETTSGGNALKFYASVRLDIRRIG
SLKDRDEVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKRGELIDLGIKAGLVEKSGSWFSYGDVRIGQGRENAKTFL
KENVEIATELEDKIRAANGLDFEMLAGPDDTDDVIVDD

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=677776 LGT41_RS11980 WP_420720186.1 2403190..2404266(+) (recA) [Abyssibius alkaniclasticus strain 960558]
ATGGCGCAATCCGTGCTGGATCTTGGCGAAAGGCGACAAATGGACAAGGAAAAGGCGCTCGAATCCGCGCTCTCACAGAT
TGAGCGGAGCTTCGGCAAAGGCTCTATCATGCGACTGGGCGCAAACAGCCCTGTTATGGATATTGCAGCAATTTCAACAG
GTTCCATTGGTCTGGATATTGCGCTTGGCATTGGTGGCCTGCCGCGCGGCCGGATTATTGAAATTTATGGCCCGGAAAGT
TCGGGCAAGACCACGCTTGCGCTGCATGTGCTGGCTGAAGAGCAGAAAAACGGCGGCATCTGCGCCTTTGTCGATGCGGA
ACACGCGCTCGACCCGCAATATGCCAAGAAACTGGGCGTCAACCTCGATGAATTGCTGATCAGCCAGCCCGATGCGGGTG
AGCAGGCGCTGGAAATTACCGAAACGCTGGTGCGTTCGGGTGCGGTTTCGGTCGTGGTTGTCGATTCGGTGGCCGCGCTT
ACCCCGAAATCCGAGCTTGAGGGCGATATGGGCGACCATCAGGTCGGCGCACAGGCCCGGTTGATGAGCCAGGCCATGCG
CAAGCTGACCGCCGCAATCAGCCGCTCCAAATGCATGGTCATTTTCATCAACCAGATTCGCATGAAAATCGGCGTGATGT
TTGGCAGCCCCGAAACGACGTCGGGTGGCAATGCGCTGAAATTCTATGCCTCGGTGCGCTTGGATATTCGCCGCATCGGC
TCGCTGAAAGACCGTGACGAGGTTGTGGGCAATGCCACGCGCGTGAAGGTCGTTAAAAACAAGGTCGCGCCCCCGTTCAA
GCAGGTGGAATTTGACATCATGTATGGCGAGGGCATTTCCAAACGCGGTGAACTGATCGACCTTGGCATCAAGGCCGGGC
TGGTTGAAAAGTCGGGCTCGTGGTTTTCCTATGGCGATGTGCGCATCGGGCAGGGGCGCGAGAATGCCAAGACCTTCCTG
AAGGAAAATGTCGAAATTGCCACCGAGCTGGAAGACAAGATCCGTGCCGCCAACGGGTTGGATTTTGAAATGCTGGCCGG
CCCCGATGACACTGATGATGTGATCGTCGACGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

66.372

94.693

0.628
  recA Neisseria gonorrhoeae strain FA1090

66.372

94.693

0.628
  recA Neisseria gonorrhoeae MS11

66.372

94.693

0.628
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.964

93.855

0.628
  recA Vibrio cholerae strain A1552

66.964

93.855

0.628
  recA Glaesserella parasuis strain SC1401

69.688

89.385

0.623
  recA Pseudomonas stutzeri DSM 10701

69.255

89.944

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.985

94.134

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

66.972

91.341

0.612
  recA Ralstonia pseudosolanacearum GMI1000

69.108

87.709

0.606
  recA Helicobacter pylori 26695

64.095

94.134

0.603
  recA Helicobacter pylori strain NCTC11637

64.095

94.134

0.603
  recA Acinetobacter baumannii D1279779

66.978

89.665

0.601
  recA Acinetobacter baylyi ADP1

66.355

89.665

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.417

91.061

0.587
  recA Lactococcus lactis subsp. cremoris KW2

59.942

95.531

0.573
  recA Streptococcus pneumoniae R6

61.515

92.179

0.567
  recA Streptococcus pneumoniae D39

61.515

92.179

0.567
  recA Streptococcus pneumoniae TIGR4

61.515

92.179

0.567
  recA Streptococcus pneumoniae Rx1

61.515

92.179

0.567
  recA Streptococcus mitis NCTC 12261

61.212

92.179

0.564
  recA Streptococcus pyogenes NZ131

56.941

98.603

0.561
  recA Streptococcus mitis SK321

60.909

92.179

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.42

90.503

0.556
  recA Streptococcus mutans UA159

58.788

92.179

0.542
  recA Latilactobacillus sakei subsp. sakei 23K

59.509

91.061

0.542