Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MWM25_RS02575 Genome accession   NZ_CP095694
Coordinates   558632..559636 (+) Length   334 a.a.
NCBI ID   WP_011964335.1    Uniprot ID   A6H1S7
Organism   Flavobacterium psychrophilum strain FPS-S6-R9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553632..564636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM25_RS02565 (MWM25_02565) - 553906..556821 (+) 2916 WP_011964334.1 T9SS sorting signal type C domain-containing protein -
  MWM25_RS02570 (MWM25_02570) - 556935..558137 (-) 1203 WP_016361990.1 IS256 family transposase -
  MWM25_RS02575 (MWM25_02575) recA 558632..559636 (+) 1005 WP_011964335.1 recombinase RecA Machinery gene
  MWM25_RS02580 (MWM25_02580) - 559681..560427 (-) 747 WP_011964336.1 lysophospholipid acyltransferase family protein -
  MWM25_RS02585 (MWM25_02585) trpS 560595..561569 (+) 975 WP_011964337.1 tryptophan--tRNA ligase -
  MWM25_RS02590 (MWM25_02590) - 562343..562795 (-) 453 WP_011964338.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36171.50 Da        Isoelectric Point: 5.9095

>NTDB_id=677519 MWM25_RS02575 WP_011964335.1 558632..559636(+) (recA) [Flavobacterium psychrophilum strain FPS-S6-R9]
MSTEKEAKLKALQLTLDKLDKTYGKGTVMKMGDKAVEEVETISSGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRSYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSEIEGE
MGDSKMGLHARLMSQALRKLTGTISKTKCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDGENVL
GNRTKVKVVKNKVAPPFKTAEFDIMYGEGVSKTGEILDLAVEFEVIRKAGSWFSYGDTKLGQGRDAVKGLIKDNPELADE
LEVKIKDLIKESNK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=677519 MWM25_RS02575 WP_011964335.1 558632..559636(+) (recA) [Flavobacterium psychrophilum strain FPS-S6-R9]
ATGAGTACAGAAAAAGAAGCCAAACTAAAAGCATTACAGCTTACATTAGATAAATTAGACAAGACTTACGGCAAAGGAAC
CGTAATGAAAATGGGCGATAAAGCTGTAGAAGAAGTAGAAACAATTTCTTCAGGATCATTAGGATTAGACCTAGCCTTAG
GAGTTGGCGGATATCCTCGTGGTCGTGTAATTGAAATATACGGACCAGAATCATCAGGAAAAACAACCTTAACCCTACAC
GCTATTGCCGAAGCCCAAAAAGCAGGAGGAATTGCCGCTTTCATAGATGCAGAACACGCCTTCGATAGAAGTTATGCCGA
AAAATTAGGTGTTGATATCGAAAATTTAATCATTTCCCAACCAGATAACGGGGAGCAAGCTTTAGAAATCGCCGAAAACT
TAATACGTTCAGGAGCAATAGATATTGTTGTAATCGATTCAGTTGCAGCACTTACCCCAAAAAGCGAAATTGAAGGCGAA
ATGGGAGATTCTAAAATGGGTCTTCATGCACGATTAATGTCGCAAGCCTTAAGAAAACTAACAGGAACAATAAGCAAAAC
AAAATGTACCGTATTTTTCATCAATCAGTTAAGAGAAAAAATAGGTGTTATGTTCGGAAATCCTGAAACAACAACAGGAG
GAAATGCGTTAAAATTTTACGCCTCGGTTCGTTTAGATATTCGCCGTTCGACACAAATAAAAGACGGTGAAAACGTACTA
GGAAATAGAACCAAGGTAAAAGTGGTAAAAAACAAAGTAGCGCCACCTTTTAAAACTGCCGAATTCGATATTATGTATGG
AGAAGGAGTATCTAAAACAGGCGAAATACTTGACTTAGCTGTAGAATTCGAAGTTATTCGAAAAGCAGGATCGTGGTTTA
GCTACGGAGACACAAAATTAGGACAAGGGCGTGACGCCGTAAAAGGACTAATAAAAGACAATCCAGAATTAGCAGACGAA
CTTGAAGTAAAAATAAAAGACCTTATCAAAGAGTCTAATAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6H1S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

77.381

100

0.778
  recA Ralstonia pseudosolanacearum GMI1000

68.285

92.515

0.632
  recA Acinetobacter baylyi ADP1

63.83

98.503

0.629
  recA Helicobacter pylori 26695

64.308

97.305

0.626
  recA Helicobacter pylori strain NCTC11637

64.308

97.305

0.626
  recA Acinetobacter baumannii D1279779

64.907

96.407

0.626
  recA Glaesserella parasuis strain SC1401

63.497

97.605

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.486

96.108

0.62
  recA Neisseria gonorrhoeae MS11

66.346

93.413

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.346

93.413

0.62
  recA Neisseria gonorrhoeae MS11

66.346

93.413

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

64.669

94.91

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

62.112

96.407

0.599
  recA Streptococcus mitis NCTC 12261

62.305

96.108

0.599
  recA Streptococcus mitis SK321

61.994

96.108

0.596
  recA Streptococcus pneumoniae Rx1

61.682

96.108

0.593
  recA Lactococcus lactis subsp. cremoris KW2

61.682

96.108

0.593
  recA Streptococcus pneumoniae R6

61.682

96.108

0.593
  recA Streptococcus pneumoniae TIGR4

61.682

96.108

0.593
  recA Streptococcus pneumoniae D39

61.682

96.108

0.593
  recA Streptococcus pyogenes NZ131

61.3

96.707

0.593
  recA Streptococcus mutans UA159

59.517

99.102

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.802

97.006

0.59
  recA Vibrio cholerae strain A1552

60.802

97.006

0.59
  recA Pseudomonas stutzeri DSM 10701

59.813

96.108

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.928

99.401

0.566