Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0P88_RS09490 Genome accession   NZ_CP095413
Coordinates   2273744..2274751 (+) Length   335 a.a.
NCBI ID   WP_247134349.1    Uniprot ID   -
Organism   Allomuricauda sp. SCSIO 64092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2268744..2279751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0P88_RS09475 (L0P88_09475) - 2270689..2271174 (-) 486 WP_247134346.1 gliding motility lipoprotein GldH -
  L0P88_RS09480 (L0P88_09480) - 2271167..2272336 (-) 1170 WP_247134347.1 stage 0 sporulation family protein -
  L0P88_RS09485 (L0P88_09485) - 2272436..2273467 (-) 1032 WP_247134348.1 rhodanese-related sulfurtransferase -
  L0P88_RS09490 (L0P88_09490) recA 2273744..2274751 (+) 1008 WP_247134349.1 recombinase RecA Machinery gene
  L0P88_RS09495 (L0P88_09495) - 2274838..2275260 (+) 423 WP_247134350.1 hypothetical protein -
  L0P88_RS09500 (L0P88_09500) - 2275286..2275816 (+) 531 WP_247134351.1 RNA polymerase sigma factor -
  L0P88_RS09505 (L0P88_09505) - 2275827..2277299 (+) 1473 WP_247134352.1 outer membrane beta-barrel protein -
  L0P88_RS09510 (L0P88_09510) - 2277342..2278058 (-) 717 WP_247134353.1 lysophospholipid acyltransferase family protein -
  L0P88_RS09515 (L0P88_09515) - 2278219..2278464 (+) 246 WP_247134354.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  L0P88_RS09520 (L0P88_09520) trpS 2278547..2279515 (+) 969 WP_247134355.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36152.44 Da        Isoelectric Point: 6.0064

>NTDB_id=676795 L0P88_RS09490 WP_247134349.1 2273744..2274751(+) (recA) [Allomuricauda sp. SCSIO 64092]
MSNEKEAKLKALKLTLDKLDKTYGKGAVMKMGDHVIEDVEVISSGSLGLDLALGVGGYPKGRVIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRFYAQKLGVDIDNLIISQPDHGEQALEIADNLIRSGAIDIVIIDSVAALTPKSEIEGE
MGDSKVGLHARLMSQALRKLTSTISKTHCTVVFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKSTDGEV
QGNKTRVKVVKNKVAPPFKTAEFDIMYGEGISKVGEILDLGVSYEIIKKSGSWFSYGDTKLGQGRDAVKGLLDDNPELSE
ELEGKIKEAIAVLKE

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=676795 L0P88_RS09490 WP_247134349.1 2273744..2274751(+) (recA) [Allomuricauda sp. SCSIO 64092]
ATGAGCAACGAAAAAGAAGCCAAACTCAAAGCGTTAAAACTTACCCTGGACAAACTTGACAAAACCTATGGCAAAGGCGC
CGTAATGAAGATGGGGGACCATGTCATTGAAGATGTCGAGGTCATTTCTTCGGGCTCCCTGGGATTGGACCTCGCCCTGG
GGGTTGGGGGATATCCCAAAGGGCGTGTCATTGAAATATACGGTCCGGAGTCCTCTGGTAAGACCACCTTAACGTTACAT
GCCATAGCCGAAGCCCAAAAGGCAGGAGGTATTGCGGCCTTTATTGATGCGGAACATGCTTTTGATCGTTTTTATGCCCA
AAAACTAGGGGTGGATATTGATAACCTTATCATCTCCCAACCCGATCATGGGGAACAGGCCTTGGAAATTGCGGACAACC
TCATCCGTTCCGGCGCCATAGACATCGTTATTATCGATTCCGTAGCCGCATTGACACCAAAAAGTGAGATTGAAGGGGAA
ATGGGGGACTCCAAAGTAGGCTTGCATGCCCGCCTGATGTCACAAGCATTGCGAAAACTGACATCTACCATTAGTAAGAC
CCATTGTACCGTGGTCTTCATCAACCAACTACGGGAAAAAATAGGGGTCATGTTTGGCAATCCCGAGACCACTACCGGTG
GAAACGCCCTTAAGTTCTATGCTTCGGTGAGACTTGATATCCGGAGGTCCACGCAAATCAAAAGCACGGATGGGGAAGTA
CAGGGGAATAAAACCCGGGTCAAAGTAGTCAAGAACAAAGTAGCTCCTCCCTTTAAAACTGCTGAATTTGATATTATGTA
CGGTGAAGGGATTTCAAAAGTTGGTGAAATCCTGGATCTTGGTGTTTCCTACGAAATCATTAAAAAAAGTGGTTCATGGT
TCAGCTATGGGGACACCAAACTAGGGCAGGGAAGGGATGCTGTCAAAGGTCTTTTGGATGACAATCCAGAGTTGTCCGAA
GAACTGGAAGGGAAAATTAAGGAGGCCATTGCCGTCTTAAAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.749

99.701

0.755
  recA Ralstonia pseudosolanacearum GMI1000

66.879

93.731

0.627
  recA Neisseria gonorrhoeae MS11

67.524

92.836

0.627
  recA Neisseria gonorrhoeae strain FA1090

67.524

92.836

0.627
  recA Neisseria gonorrhoeae MS11

67.524

92.836

0.627
  recA Glaesserella parasuis strain SC1401

64.024

97.91

0.627
  recA Acinetobacter baylyi ADP1

63.777

96.418

0.615
  recA Helicobacter pylori strain NCTC11637

63.19

97.313

0.615
  recA Helicobacter pylori 26695

63.19

97.313

0.615
  recA Acinetobacter baumannii D1279779

63.077

97.015

0.612
  recA Pseudomonas stutzeri DSM 10701

62.691

97.612

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

97.313

0.606
  recA Streptococcus mitis SK321

63.043

96.119

0.606
  recA Streptococcus mitis NCTC 12261

63.043

96.119

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.522

94.925

0.603
  recA Lactococcus lactis subsp. cremoris KW2

61.162

97.612

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

60.79

98.209

0.597
  recA Streptococcus pyogenes NZ131

61.61

96.418

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.923

97.015

0.591
  recA Vibrio cholerae strain A1552

60.923

97.015

0.591
  recA Streptococcus pneumoniae R6

60.55

97.612

0.591
  recA Streptococcus pneumoniae TIGR4

60.55

97.612

0.591
  recA Streptococcus pneumoniae Rx1

60.55

97.612

0.591
  recA Streptococcus pneumoniae D39

60.55

97.612

0.591
  recA Streptococcus mutans UA159

59.697

98.507

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.009

95.821

0.546