Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MU540_RS02675 Genome accession   NZ_CP095385
Coordinates   543009..544070 (+) Length   353 a.a.
NCBI ID   WP_003686016.1    Uniprot ID   A0A2V2D9T2
Organism   Limosilactobacillus fermentum strain VHProbi O48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 538009..549070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU540_RS02655 (MU540_02635) yfmH 538592..539893 (+) 1302 WP_003682803.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MU540_RS02660 (MU540_02640) - 539990..540994 (+) 1005 WP_003686010.1 RodZ domain-containing protein -
  MU540_RS02665 (MU540_02645) pgsA 541010..541594 (+) 585 WP_003682805.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MU540_RS02670 (MU540_02650) - 541671..542915 (+) 1245 WP_012390968.1 competence/damage-inducible protein A -
  MU540_RS02675 (MU540_02655) recA 543009..544070 (+) 1062 WP_003686016.1 recombinase RecA Machinery gene
  MU540_RS02680 (MU540_02660) rny 544465..546024 (+) 1560 WP_012390969.1 ribonuclease Y -
  MU540_RS02685 (MU540_02665) mutS 546118..548760 (+) 2643 WP_257693235.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38141.24 Da        Isoelectric Point: 4.9958

>NTDB_id=676650 MU540_RS02675 WP_003686016.1 543009..544070(+) (recA) [Limosilactobacillus fermentum strain VHProbi O48]
MADQRKAALDNALRKIEKNFGKGSIMRMGDAADTKIATISSGSLAIDEALGVGGYPRGRIIEMYGPESSGKTTVALHAVA
EVQRRGGTAAYIDAENALDPQYATALGVQINDLLLSQPDTGEQGLEIADALIASGAVDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRMEIRRGEQLKNGTDVIGNR
AKIKVVKNKVAPPFRKAEVDIMYGEGISKTGELLDMAVEKDLVNKSGAWYSYGNERIGQGRENAKQWFADHEDAMNELMN
KVRVAYGMEPDEAPATKEGEPQQETIEEASSDK

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=676650 MU540_RS02675 WP_003686016.1 543009..544070(+) (recA) [Limosilactobacillus fermentum strain VHProbi O48]
TTGGCAGATCAACGAAAAGCAGCCTTAGATAACGCCCTGCGTAAGATTGAAAAGAACTTTGGGAAGGGTTCGATCATGCG
GATGGGTGACGCCGCCGACACCAAGATTGCAACCATTTCCAGTGGCTCCTTAGCCATTGACGAAGCCCTCGGTGTAGGGG
GGTACCCACGGGGCCGAATCATTGAAATGTACGGTCCGGAAAGTTCCGGGAAGACGACCGTCGCTCTCCACGCCGTCGCT
GAAGTGCAACGCCGTGGGGGGACGGCCGCCTACATCGACGCCGAAAACGCCCTCGATCCCCAGTACGCTACCGCCCTGGG
GGTTCAAATTAACGACTTGCTCTTGTCCCAACCAGACACCGGTGAACAGGGGTTGGAAATTGCCGACGCCCTGATCGCTT
CGGGAGCCGTCGACATCGTGGTGGTTGACTCCGTGGCCGCCCTGGTTCCCCGGGCCGAAATCGAAGGGGAAATGGGGGAC
ACCCACGTGGGGTTACAGGCCCGCTTGATGTCCCAAGCCCTGCGGAAGCTTTCCGGGGAAATCAACAAGACCAAGACGAT
CGCCATCTTCATCAACCAAATCCGGGAAAAGGTGGGGGTGATGTTTGGGAACCCGGAAACCACCCCTGGTGGTCGGGCCC
TGAAGTTCTACTCAACCATTCGGATGGAAATCCGGCGCGGTGAACAACTGAAGAACGGGACCGATGTGATCGGGAACCGG
GCCAAGATTAAGGTCGTGAAGAACAAGGTGGCACCGCCGTTCCGCAAGGCCGAAGTAGACATCATGTATGGGGAAGGGAT
CTCCAAGACGGGGGAACTGCTCGATATGGCCGTCGAAAAGGACCTGGTCAACAAGTCCGGGGCCTGGTATTCTTATGGCA
ATGAACGGATTGGCCAAGGGCGTGAAAACGCCAAGCAGTGGTTTGCGGACCACGAAGACGCCATGAACGAGCTAATGAAC
AAGGTGCGGGTGGCCTACGGGATGGAACCGGACGAAGCGCCGGCCACCAAGGAAGGCGAACCGCAACAAGAAACGATTGA
AGAAGCGTCGAGTGACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V2D9T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.176

96.317

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

74.772

93.201

0.697
  recA Streptococcus mitis SK321

66.667

97.734

0.652
  recA Streptococcus mutans UA159

64.426

100

0.652
  recA Streptococcus mitis NCTC 12261

66.377

97.734

0.649
  recA Streptococcus pyogenes NZ131

68.278

93.768

0.64
  recA Streptococcus pneumoniae Rx1

68.085

93.201

0.635
  recA Streptococcus pneumoniae D39

68.085

93.201

0.635
  recA Streptococcus pneumoniae R6

68.085

93.201

0.635
  recA Streptococcus pneumoniae TIGR4

68.085

93.201

0.635
  recA Lactococcus lactis subsp. cremoris KW2

66.566

94.051

0.626
  recA Neisseria gonorrhoeae strain FA1090

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Neisseria gonorrhoeae MS11

60.909

93.484

0.569
  recA Ralstonia pseudosolanacearum GMI1000

63.492

89.235

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.939

92.635

0.555
  recA Glaesserella parasuis strain SC1401

55.114

99.717

0.55
  recA Helicobacter pylori 26695

57.27

95.467

0.547
  recA Helicobacter pylori strain NCTC11637

57.27

95.467

0.547
  recA Pseudomonas stutzeri DSM 10701

59.133

91.501

0.541
  recA Vibrio cholerae strain A1552

58.824

91.501

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.824

91.501

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.273

93.484

0.535
  recA Acinetobacter baumannii D1279779

57.895

91.501

0.53
  recA Acinetobacter baylyi ADP1

57.895

91.501

0.53
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.923

92.068

0.524