Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUU77_RS06410 Genome accession   NZ_CP095187
Coordinates   1393880..1394914 (+) Length   344 a.a.
NCBI ID   WP_245092939.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. F37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388880..1399914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU77_RS06395 (MUU77_06395) - 1390802..1391293 (+) 492 WP_245092933.1 nicotinamide-nucleotide amidohydrolase family protein -
  MUU77_RS06400 (MUU77_06400) - 1391325..1393010 (+) 1686 WP_245092935.1 AarF/UbiB family protein -
  MUU77_RS06405 (MUU77_06405) lexA 1393057..1393698 (+) 642 WP_245092937.1 transcriptional repressor LexA -
  MUU77_RS06410 (MUU77_06410) recA 1393880..1394914 (+) 1035 WP_245092939.1 recombinase RecA Machinery gene
  MUU77_RS06415 (MUU77_06415) recX 1394941..1395453 (+) 513 WP_245092941.1 recombination regulator RecX -
  MUU77_RS06420 (MUU77_06420) alaS 1395546..1398197 (+) 2652 WP_245092943.1 alanine--tRNA ligase -
  MUU77_RS06425 (MUU77_06425) csrA 1398350..1398559 (+) 210 WP_245092951.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37174.73 Da        Isoelectric Point: 5.0664

>NTDB_id=676039 MUU77_RS06410 WP_245092939.1 1393880..1394914(+) (recA) [Pseudoxanthomonas sp. F37]
MDENKKRALSAALTQIERQFGKGSVMRMGDRVIEPVEAIPTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKLGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSIDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVVTEILYGEGISREGELIDMGVDAKLVEKAGAWYSYGSERIGQGKDNSRTFLRENPAIAAKL
EAELREKFQPAEAQREENADDDAE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=676039 MUU77_RS06410 WP_245092939.1 1393880..1394914(+) (recA) [Pseudoxanthomonas sp. F37]
ATGGACGAGAACAAGAAGCGCGCCCTTTCCGCCGCACTGACCCAGATCGAGCGCCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGATAGGGTCATCGAGCCCGTCGAGGCCATCCCCACCGGTTCGCTGATGCTGGACCTGGCGCTGGGTATCGGCG
GACTGCCCAAGGGGCGCGTGGTCGAGATCTATGGGCCGGAGTCCTCCGGCAAGACCACGCTGACGCTGCAGGCCATTGCC
CAATGCCAGAAGCTGGGGGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTGGATCCGATCTATGCCGCGAAACTGGG
CGTGAACGTGGACGATCTGCTGCTGTCCCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGCGCT
CCGGGTCCATCGACATCGTGGTCATCGACTCGGTCGCCGCGCTGACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAT
CAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGTTCCAACACCTT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCCGGCCAGAGTCCGGAAACCACCACCGGCGGCA
ACGCACTGAAGTTCTACGCCTCGGTCCGCCTGGACATCCGTCGTATCGGTGCCATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTGGTCACGGAGATCCTGTACGGCGA
GGGCATCAGCCGTGAAGGTGAGCTGATCGACATGGGCGTGGATGCCAAGCTGGTGGAGAAGGCCGGTGCCTGGTACAGCT
ACGGCAGCGAGCGTATCGGCCAGGGCAAGGACAACTCGCGTACGTTCCTGCGCGAGAACCCGGCCATTGCCGCGAAGCTG
GAGGCCGAGCTGCGCGAGAAGTTCCAGCCGGCCGAGGCGCAGCGGGAAGAGAACGCGGACGACGACGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.349

100

0.703
  recA Ralstonia pseudosolanacearum GMI1000

76.358

90.988

0.695
  recA Vibrio cholerae strain A1552

67.816

100

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.816

100

0.686
  recA Acinetobacter baumannii D1279779

71.951

95.349

0.686
  recA Pseudomonas stutzeri DSM 10701

71.341

95.349

0.68
  recA Neisseria gonorrhoeae MS11

69.325

94.767

0.657
  recA Neisseria gonorrhoeae MS11

69.325

94.767

0.657
  recA Neisseria gonorrhoeae strain FA1090

69.325

94.767

0.657
  recA Glaesserella parasuis strain SC1401

68.731

93.895

0.645
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

97.093

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65

93.023

0.605
  recA Helicobacter pylori strain NCTC11637

62.048

96.512

0.599
  recA Helicobacter pylori 26695

61.446

96.512

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.462

94.477

0.59
  recA Streptococcus mitis SK321

57.593

100

0.584
  recA Streptococcus mitis NCTC 12261

57.593

100

0.584
  recA Streptococcus pneumoniae D39

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.671

95.349

0.578
  recA Streptococcus pneumoniae R6

60.671

95.349

0.578
  recA Streptococcus pneumoniae TIGR4

60.671

95.349

0.578
  recA Streptococcus mutans UA159

60

95.93

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

59.104

97.384

0.576
  recA Streptococcus pyogenes NZ131

59.091

95.93

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.788

95.93

0.564
  recA Lactococcus lactis subsp. cremoris KW2

57.846

94.477

0.547