Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUU74_RS08200 Genome accession   NZ_CP095185
Coordinates   1710618..1711619 (-) Length   333 a.a.
NCBI ID   WP_123262437.1    Uniprot ID   -
Organism   Chryseobacterium daecheongense strain F23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1705618..1716619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU74_RS08175 (MUU74_08225) - 1705805..1706125 (+) 321 WP_245144142.1 hypothetical protein -
  MUU74_RS08180 (MUU74_08230) - 1706171..1706878 (+) 708 WP_245144144.1 GLPGLI family protein -
  MUU74_RS08185 (MUU74_08235) htpG 1706943..1708832 (-) 1890 WP_245144146.1 molecular chaperone HtpG -
  MUU74_RS08190 (MUU74_08240) - 1708920..1709459 (-) 540 WP_245144148.1 hypothetical protein -
  MUU74_RS08195 (MUU74_08245) - 1709607..1710461 (-) 855 WP_245144150.1 AraC family transcriptional regulator -
  MUU74_RS08200 (MUU74_08250) recA 1710618..1711619 (-) 1002 WP_123262437.1 recombinase RecA Machinery gene
  MUU74_RS08205 (MUU74_08255) - 1711812..1713008 (-) 1197 WP_245144151.1 oxygenase MpaB family protein -
  MUU74_RS08210 (MUU74_08260) - 1713066..1713851 (-) 786 WP_245144156.1 helix-turn-helix transcriptional regulator -
  MUU74_RS08215 (MUU74_08265) - 1714419..1715267 (+) 849 WP_245144158.1 hypothetical protein -
  MUU74_RS08220 (MUU74_08270) gap 1715359..1716363 (-) 1005 WP_121460071.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35845.18 Da        Isoelectric Point: 5.8932

>NTDB_id=676001 MUU74_RS08200 WP_123262437.1 1710618..1711619(-) (recA) [Chryseobacterium daecheongense strain F23]
MSNIEDKKKALALVLDKLDKTYGKGTVMTLGDNSVDNTIEVIPSGSLGLDIALGVGGYPRGRIIEIYGPESSGKTTLTLH
AIAEAQKAGGIAAFIDAEHAFDRTYAAKLGIDLENLIISQPDNGEQALEIADNLIRSGAIDIVVIDSVAALTPKAEIEGE
MGDSKMGLHARLMSQALRKLTATISRTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRVDIRKASAPIKQGDEA
IGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKTGEILDQAVELGIVKKSGSWFSYEDTKLGQGRDAVKDVLKDNPELAE
ELENKIKEVLKNK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=676001 MUU74_RS08200 WP_123262437.1 1710618..1711619(-) (recA) [Chryseobacterium daecheongense strain F23]
ATGAGTAATATTGAAGATAAGAAAAAAGCACTTGCATTGGTGCTTGACAAACTAGATAAAACGTACGGAAAGGGAACTGT
AATGACTTTGGGAGATAATTCCGTAGACAATACTATTGAAGTAATTCCTTCCGGATCTTTAGGACTAGATATTGCATTGG
GAGTTGGAGGGTATCCTAGAGGAAGAATCATTGAAATTTACGGACCTGAATCTTCAGGTAAAACCACTTTAACGCTTCAT
GCTATTGCCGAGGCTCAAAAAGCAGGCGGAATTGCAGCATTTATTGATGCTGAACATGCTTTCGACAGAACGTATGCGGC
AAAACTGGGAATTGATTTGGAAAATTTGATCATTTCTCAGCCGGATAATGGGGAACAGGCTTTAGAAATTGCCGATAACC
TGATCCGTTCAGGAGCGATTGACATTGTTGTTATCGACTCGGTAGCAGCACTTACTCCAAAAGCGGAAATTGAAGGAGAA
ATGGGAGATTCTAAGATGGGTCTTCATGCAAGATTGATGTCTCAGGCATTAAGAAAGCTGACCGCTACAATTTCAAGAAC
AAAATGTACGGTGATTTTCATCAACCAGTTGAGAGAGAAAATCGGGGTAATGTTCGGAAATCCTGAAACAACAACCGGTG
GTAACGCCTTGAAATTCTATGCTTCTGTAAGAGTAGACATCAGAAAAGCCAGTGCACCGATTAAACAGGGAGATGAAGCA
ATCGGAAGCCGTGTGAAAGTGAAAATCGTGAAGAACAAAGTGGCTCCACCTTTCAAACAGGCAGAATTTGACATTATGTA
TGGTGAAGGTGTTTCCAAAACAGGGGAAATCCTTGATCAGGCAGTGGAATTAGGAATTGTAAAGAAAAGTGGTTCTTGGT
TCAGCTATGAAGATACTAAGTTGGGACAAGGCCGTGATGCGGTAAAGGATGTTTTAAAAGACAATCCGGAACTTGCGGAA
GAGCTGGAAAATAAAATCAAAGAAGTGTTGAAAAACAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.48

100

0.805
  recA Ralstonia pseudosolanacearum GMI1000

63.798

100

0.646
  recA Acinetobacter baumannii D1279779

65.031

97.898

0.637
  recA Acinetobacter baylyi ADP1

64.438

98.799

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

98.198

0.637
  recA Glaesserella parasuis strain SC1401

64.417

97.898

0.631
  recA Helicobacter pylori strain NCTC11637

64.308

97.598

0.628
  recA Helicobacter pylori 26695

64.308

97.598

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

97.598

0.616
  recA Neisseria gonorrhoeae MS11

62.848

96.997

0.61
  recA Neisseria gonorrhoeae MS11

62.848

96.997

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.848

96.997

0.61
  recA Pseudomonas stutzeri DSM 10701

61.35

97.898

0.601
  recA Streptococcus mitis NCTC 12261

61.35

97.898

0.601
  recA Streptococcus mitis SK321

61.35

97.898

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.671

98.498

0.598
  recA Vibrio cholerae strain A1552

60.671

98.498

0.598
  recA Streptococcus pyogenes NZ131

60.55

98.198

0.595
  recA Lactococcus lactis subsp. cremoris KW2

60.429

97.898

0.592
  recA Streptococcus pneumoniae Rx1

60

97.598

0.586
  recA Streptococcus pneumoniae D39

60

97.598

0.586
  recA Streptococcus pneumoniae R6

60

97.598

0.586
  recA Streptococcus pneumoniae TIGR4

60

97.598

0.586
  recA Streptococcus mutans UA159

59.633

98.198

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

96.997

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.758

99.099

0.553