Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GR930_RS04920 | Genome accession | NZ_AP022351 |
| Coordinates | 1010950..1011390 (-) | Length | 146 a.a. |
| NCBI ID | WP_000360914.1 | Uniprot ID | A0A0H2YVZ3 |
| Organism | Escherichia coli strain E138 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1005950..1016390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GR930_RS04900 (RIMDOsaka138_09390) | coaE | 1006440..1007060 (-) | 621 | WP_001269520.1 | dephospho-CoA kinase | - |
| GR930_RS23325 | - | 1007085..1007129 (+) | 45 | WP_120795372.1 | protein YacM | - |
| GR930_RS04905 (RIMDOsaka138_09400) | guaC | 1007285..1008328 (+) | 1044 | WP_001217320.1 | GMP reductase | - |
| GR930_RS04910 (RIMDOsaka138_09410) | hofC | 1008363..1009565 (-) | 1203 | WP_000157289.1 | protein transport protein HofC | - |
| GR930_RS04915 (RIMDOsaka138_09420) | pilB | 1009555..1010940 (-) | 1386 | WP_001025180.1 | type II secretion system protein GspE | Machinery gene |
| GR930_RS04920 (RIMDOsaka138_09430) | pilA | 1010950..1011390 (-) | 441 | WP_000360914.1 | prepilin peptidase-dependent pilin | Machinery gene |
| GR930_RS04925 (RIMDOsaka138_09440) | nadC | 1011594..1012487 (-) | 894 | WP_001135168.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GR930_RS04930 (RIMDOsaka138_09450) | ampD | 1012575..1013126 (+) | 552 | WP_000923703.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| GR930_RS04935 (RIMDOsaka138_09460) | ampE | 1013123..1013977 (+) | 855 | WP_000171980.1 | beta-lactamase regulator AmpE | - |
| GR930_RS04940 (RIMDOsaka138_09470) | aroP | 1014020..1015390 (-) | 1371 | WP_000399017.1 | aromatic amino acid transporter AroP | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15620.77 Da Isoelectric Point: 4.5237
>NTDB_id=67583 GR930_RS04920 WP_000360914.1 1010950..1011390(-) (pilA) [Escherichia coli strain E138]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN
Nucleotide
Download Length: 441 bp
>NTDB_id=67583 GR930_RS04920 WP_000360914.1 1010950..1011390(-) (pilA) [Escherichia coli strain E138]
ATGGACAAGCAACGCGGTTTTACACTTATTGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
ATGGACAAGCAACGCGGTTTTACACTTATTGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
43.089 |
84.247 |
0.363 |