Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NOS3756_RS02875 Genome accession   NZ_AP017295
Coordinates   698442..699518 (-) Length   358 a.a.
NCBI ID   WP_067764255.1    Uniprot ID   -
Organism   Nostoc sp. NIES-3756     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 693442..704518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOS3756_RS02865 (NOS3756_05910) nifJ 693835..697437 (+) 3603 WP_067764248.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  NOS3756_RS02870 (NOS3756_05920) lepB 697585..698157 (-) 573 WP_067764251.1 signal peptidase I -
  NOS3756_RS02875 (NOS3756_05930) recA 698442..699518 (-) 1077 WP_067764255.1 recombinase RecA Machinery gene
  NOS3756_RS02880 (NOS3756_05940) - 699752..700933 (-) 1182 WP_067764258.1 FAD-dependent oxidoreductase -
  NOS3756_RS02885 (NOS3756_05950) - 701295..702062 (+) 768 WP_067764261.1 pentapeptide repeat-containing protein -
  NOS3756_RS02890 (NOS3756_05960) - 702220..703689 (+) 1470 WP_067764264.1 pentapeptide repeat-containing protein -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 38346.66 Da        Isoelectric Point: 4.8838

>NTDB_id=67583 NOS3756_RS02875 WP_067764255.1 698442..699518(-) (recA) [Nostoc sp. NIES-3756]
MAINTDTSGKQKALTMVLNQIERSFGKGTIMRLGDATRMRVETISTGALTLDLALGGGLPKGRVIEIYGPESSGKTTVAL
HAIAEVQKQGGIAAFVDAEHALDPTYAGALGVDIANLLVSQPDTGESALEIVDQLVRSAAVDIVVIDSVAALVPRAEIEG
DMGDAHVGLQARLMSQALRKITGNIGKSGCTVIFINQLRQKIGVTYGSPETTTGGNALKFYASVRLDIRRIQTLKKGTDE
FGNRVKVKVAKNKVAPPFRIAEFDIIFGKGVSTLGCLVDLAEETGVLIRKGAWYSYNGDNISQGRDNAIKYLEEKPEFAE
QITQLVREKLDKGAVVSANSVAKANEEDEEDVDLEEEE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=67583 NOS3756_RS02875 WP_067764255.1 698442..699518(-) (recA) [Nostoc sp. NIES-3756]
ATGGCTATCAATACCGATACTTCTGGCAAGCAAAAAGCGCTAACGATGGTACTCAACCAGATAGAGCGTAGCTTCGGTAA
AGGAACAATCATGCGCCTGGGTGATGCTACCCGGATGCGGGTAGAAACAATTTCTACCGGAGCGCTCACCTTGGATTTAG
CCTTGGGTGGCGGTTTACCCAAAGGACGGGTGATTGAGATTTATGGGCCGGAAAGCTCTGGTAAAACTACCGTAGCACTC
CATGCGATCGCCGAAGTGCAAAAACAAGGTGGCATTGCTGCTTTTGTGGATGCTGAACACGCCCTTGACCCCACCTATGC
CGGGGCTTTAGGTGTAGATATCGCAAATCTGTTGGTATCCCAACCAGACACAGGTGAATCAGCCTTAGAAATTGTCGATC
AGCTGGTGCGTTCTGCCGCCGTTGACATCGTAGTTATCGACTCAGTAGCAGCCTTGGTTCCCCGTGCGGAAATCGAAGGT
GACATGGGTGATGCCCACGTCGGCTTGCAAGCAAGATTAATGAGCCAAGCGCTACGTAAAATTACTGGTAATATTGGTAA
ATCCGGTTGTACAGTAATTTTCATTAACCAATTGCGGCAAAAAATTGGTGTTACCTACGGTAGCCCAGAAACCACAACTG
GTGGTAACGCTTTGAAATTCTATGCTTCTGTACGCTTAGACATTCGCCGGATTCAAACCTTGAAAAAAGGTACTGATGAA
TTTGGTAACAGAGTTAAAGTCAAAGTTGCTAAAAATAAAGTTGCACCGCCTTTTAGAATTGCGGAATTTGACATTATTTT
TGGTAAAGGAGTTTCTACTCTAGGTTGTTTAGTAGACTTGGCTGAAGAAACTGGTGTCCTCATCCGTAAAGGTGCATGGT
ACAGTTACAACGGCGATAACATTTCTCAAGGTCGAGATAATGCCATTAAATACCTAGAAGAAAAGCCAGAATTTGCTGAA
CAAATTACGCAACTGGTACGGGAGAAGTTAGACAAGGGCGCTGTCGTTTCGGCTAACTCTGTGGCTAAAGCTAATGAAGA
AGATGAAGAAGATGTTGATTTAGAGGAAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.655

97.207

0.628

  recA Acinetobacter baumannii D1279779

63.977

96.927

0.62

  recA Pseudomonas stutzeri DSM 10701

63.584

96.648

0.615

  recA Ralstonia pseudosolanacearum GMI1000

65.06

92.737

0.603

  recA Bacillus subtilis subsp. subtilis str. 168

62.651

92.737

0.581

  recA Glaesserella parasuis strain SC1401

59.599

97.486

0.581

  recA Helicobacter pylori strain NCTC11637

61.446

92.737

0.57

  recA Helicobacter pylori 26695

61.446

92.737

0.57

  recA Neisseria gonorrhoeae strain FA1090

63.438

89.385

0.567

  recA Neisseria gonorrhoeae MS11

63.438

89.385

0.567

  recA Neisseria gonorrhoeae MS11

63.438

89.385

0.567

  recA Vibrio cholerae strain A1552

62.422

89.944

0.561

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.422

89.944

0.561

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.94

92.737

0.556

  recA Streptococcus pneumoniae Rx1

56.091

98.603

0.553

  recA Streptococcus pneumoniae D39

56.091

98.603

0.553

  recA Streptococcus pneumoniae R6

56.091

98.603

0.553

  recA Streptococcus pneumoniae TIGR4

56.091

98.603

0.553

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.366

91.62

0.553

  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.106

0.547

  recA Streptococcus mitis NCTC 12261

55.367

98.883

0.547

  recA Streptococcus mutans UA159

59.877

90.503

0.542

  recA Streptococcus pyogenes NZ131

58.589

91.061

0.534

  recA Streptococcus mitis SK321

59.133

90.223

0.534

  recA Lactococcus lactis subsp. cremoris KW2

58.514

90.223

0.528

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.75

89.385

0.525


Multiple sequence alignment