Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA90_RS08480 Genome accession   NZ_CP095096
Coordinates   1741144..1742205 (-) Length   353 a.a.
NCBI ID   WP_105992933.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6181     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1736144..1747205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA90_RS08465 (MUA90_08470) - 1736420..1737613 (+) 1194 WP_262586295.1 MFS transporter -
  MUA90_RS08470 (MUA90_08475) - 1737882..1739204 (+) 1323 WP_262586296.1 ISL3 family transposase -
  MUA90_RS08475 (MUA90_08480) rny 1739385..1740944 (-) 1560 WP_262586298.1 ribonuclease Y -
  MUA90_RS08480 (MUA90_08485) recA 1741144..1742205 (-) 1062 WP_105992933.1 recombinase RecA Machinery gene
  MUA90_RS08485 (MUA90_08490) - 1742378..1743520 (-) 1143 WP_262586299.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA90_RS08490 (MUA90_08495) pgsA 1743655..1744236 (-) 582 WP_105992935.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA90_RS08495 (MUA90_08500) - 1744262..1744660 (-) 399 WP_114603461.1 RodZ family helix-turn-helix domain-containing protein -
  MUA90_RS08500 (MUA90_08505) - 1744682..1745521 (-) 840 WP_114603462.1 DUF3388 domain-containing protein -
  MUA90_RS08505 (MUA90_08510) ymfI 1745654..1746358 (-) 705 WP_262586301.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38457.45 Da        Isoelectric Point: 5.1184

>NTDB_id=675384 MUA90_RS08480 WP_105992933.1 1741144..1742205(-) (recA) [Staphylococcus sp. IVB6181]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQKQGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNCTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVEHDIVDKSGAWYSYNGDRMGQGKENVKNYLKEHPEVKEDIDH
KLRQKLGIFDGDVEEKEEKEADKDANTTLFDEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=675384 MUA90_RS08480 WP_105992933.1 1741144..1742205(-) (recA) [Staphylococcus sp. IVB6181]
TTGGATAATGAACGTCAAAAAGCGCTAGATACTGTCATTAAAAATATGGAGAAATCGTTTGGTAAAGGTGCCGTAATGAA
ATTGGGCGATAACAAAGCTCGCCGTGTTTCAAGTGTATCAAGCGGTTCAGTTACACTAGATAATGCATTAGGAGTAGGCG
GCTACCCTAAAGGAAGAATTGTAGAAATTTACGGACCAGAAAGTTCTGGTAAAACAACAGTTGCTTTGCATGCAATTGCG
GAAGTACAAAAACAAGGCGGCGTAGCGGCATTTATTGATGCTGAGCACGCATTAGACCCTGTATACGCTGAAGCATTAGG
TGTAGATATCGATAACCTTTATTTATCTCAACCTGACCACGGGGAACAAGGTTTAGAGATTGCGGAAGCATTCGTACGAA
GCGGTGCAGTAGACATTATTGTTGTCGACTCAGTTGCTGCGTTAACACCTAAAGCTGAAATCGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTGCAAGCACGTTTAATGTCTCAAGCATTGCGTAAACTTTCAGGTGCCATTTCAAAATCAAACTGTAC
AGCAATCTTCATCAACCAAATCCGTGAAAAAGTTGGCGTTATGTTCGGTAATCCAGAAACAACTCCTGGTGGTCGCGCAT
TGAAATTCTATAGTTCAGTACGTTTAGAAGTTCGTCGTGCAGAACAATTGAAGCAAGGCCAAGAAATCGTGGGTAACCGT
ACTAAAATCAAAGTCGTTAAAAACAAAGTTGCACCGCCATTCAGAGTGGCTGAAGTTGACATCATGTACGGCCAAGGTAT
CTCTAAAGAAGGCGAATTAATCGACTTAGGTGTAGAACATGATATTGTCGATAAATCAGGTGCTTGGTACTCTTACAACG
GCGACCGTATGGGCCAAGGTAAAGAAAATGTTAAGAACTACTTGAAAGAACATCCAGAAGTCAAAGAAGACATCGATCAC
AAGTTAAGACAAAAATTAGGTATCTTTGATGGAGATGTTGAAGAGAAAGAAGAAAAAGAAGCGGATAAAGACGCAAATAC
AACTTTATTCGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.46

92.351

0.697
  recA Latilactobacillus sakei subsp. sakei 23K

72.561

92.918

0.674
  recA Streptococcus mutans UA159

64.804

100

0.657
  recA Streptococcus mitis SK321

63.842

100

0.64
  recA Streptococcus mitis NCTC 12261

63.559

100

0.637
  recA Streptococcus pneumoniae R6

64.638

97.734

0.632
  recA Streptococcus pneumoniae TIGR4

64.638

97.734

0.632
  recA Streptococcus pneumoniae Rx1

64.638

97.734

0.632
  recA Streptococcus pneumoniae D39

64.638

97.734

0.632
  recA Streptococcus pyogenes NZ131

67.477

93.201

0.629
  recA Lactococcus lactis subsp. cremoris KW2

66.767

93.768

0.626
  recA Acinetobacter baumannii D1279779

63.663

97.45

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.372

97.45

0.618
  recA Vibrio cholerae strain A1552

66.564

92.351

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.564

92.351

0.615
  recA Acinetobacter baylyi ADP1

66.258

92.351

0.612
  recA Neisseria gonorrhoeae MS11

64.742

93.201

0.603
  recA Neisseria gonorrhoeae MS11

64.742

93.201

0.603
  recA Neisseria gonorrhoeae strain FA1090

64.742

93.201

0.603
  recA Ralstonia pseudosolanacearum GMI1000

64.939

92.918

0.603
  recA Pseudomonas stutzeri DSM 10701

60.116

98.017

0.589
  recA Helicobacter pylori 26695

63.415

92.918

0.589
  recA Helicobacter pylori strain NCTC11637

63.11

92.918

0.586
  recA Glaesserella parasuis strain SC1401

58.286

99.15

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

93.768

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

90.652

0.547