Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GJW30_RS11385 Genome accession   NZ_AP014946
Coordinates   2352199..2353272 (+) Length   357 a.a.
NCBI ID   WP_096355372.1    Uniprot ID   A0A0S3PV61
Organism   Variibacter gotjawalensis strain GJW-30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2347199..2358272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJW30_RS11360 (GJW-30_1_02276) - 2347935..2348909 (-) 975 WP_157746740.1 tripartite tricarboxylate transporter substrate binding protein -
  GJW30_RS11365 (GJW-30_1_02277) - 2349074..2350732 (+) 1659 WP_096355364.1 fumarate hydratase -
  GJW30_RS11370 (GJW-30_1_02278) - 2350865..2351551 (+) 687 WP_130364893.1 Crp/Fnr family transcriptional regulator -
  GJW30_RS11375 (GJW-30_1_02279) - 2351548..2351736 (+) 189 WP_096355368.1 hypothetical protein -
  GJW30_RS11380 (GJW-30_1_02280) - 2351800..2352042 (+) 243 WP_096355370.1 hypothetical protein -
  GJW30_RS11385 (GJW-30_1_02281) recA 2352199..2353272 (+) 1074 WP_096355372.1 recombinase RecA Machinery gene
  GJW30_RS11390 (GJW-30_1_02282) alaS 2353496..2356156 (+) 2661 WP_096355374.1 alanine--tRNA ligase -
  GJW30_RS11395 (GJW-30_1_02283) - 2356416..2357393 (+) 978 WP_096355376.1 tripartite tricarboxylate transporter substrate binding protein -
  GJW30_RS11400 (GJW-30_1_02284) - 2357398..2357862 (+) 465 WP_096355378.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38344.99 Da        Isoelectric Point: 5.2053

>NTDB_id=67518 GJW30_RS11385 WP_096355372.1 2352199..2353272(+) (recA) [Variibacter gotjawalensis strain GJW-30]
MGQAALRVVEGNSMDKSKALDAALSQIERAFGKGSIMRLGKSDKVETEVISSGSLGLDIALGIGGLPRGRVIEIYGPESS
GKTTLALHAVSEAQKRAGVCAYIDAEHALDPIYARKLGVNIDDLLISQPDTGEQALEICDTLVRSNAIDVLVIDSVAALV
PRAELEGEMGDSQPGLQARLMSQALRKLTASINKSNTMVIFINQIRMKIGVMYGSPETTTGGQALKFYSSIRLDIRRIGA
IKEREEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGEGVSKMGEILDLGVKAGVVEKSGAWFSYDSVRIGQGRENAKTFLK
GNPEMAGKIEVSIRQNAGLIAEKILAGEPEEEDDGEP

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=67518 GJW30_RS11385 WP_096355372.1 2352199..2353272(+) (recA) [Variibacter gotjawalensis strain GJW-30]
ATGGGCCAAGCCGCACTGCGCGTCGTTGAAGGAAATTCTATGGATAAGTCCAAGGCGCTGGATGCGGCGTTGAGCCAAAT
CGAGCGTGCTTTCGGCAAAGGCTCGATCATGCGGCTCGGTAAGAGCGACAAGGTCGAGACCGAGGTCATTTCCTCCGGCT
CGCTTGGCCTCGATATCGCGCTGGGCATCGGCGGTTTGCCGCGCGGCCGCGTCATCGAAATTTACGGTCCGGAATCGTCG
GGCAAGACGACCCTCGCTCTCCATGCCGTGTCCGAGGCTCAAAAGCGGGCAGGCGTTTGCGCTTATATCGACGCCGAACA
TGCGCTCGACCCTATCTACGCACGCAAGCTGGGCGTTAACATCGACGACCTTCTGATCTCGCAGCCCGACACGGGCGAGC
AGGCTCTCGAAATCTGCGACACGCTGGTGCGCTCCAACGCAATCGACGTGCTGGTGATCGACTCGGTCGCCGCCCTTGTG
CCGCGCGCCGAACTCGAAGGCGAGATGGGCGACAGTCAGCCGGGCCTGCAGGCGCGACTGATGAGCCAAGCGCTGCGTAA
GCTCACCGCTTCGATCAACAAGTCGAACACGATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTATG
GCTCGCCGGAGACGACAACGGGCGGCCAGGCGCTGAAGTTTTACTCCTCGATCCGCCTCGACATCCGCCGCATCGGGGCG
ATCAAGGAACGTGAAGAGGTTGTCGGCAACCAGACACGCGTCAAGGTTGTGAAGAACAAGCTGGCGCCGCCGTTCAAGCA
GGTCGAATTCGACATTATGTATGGCGAAGGTGTCTCCAAGATGGGCGAGATTCTCGATCTTGGCGTCAAAGCTGGTGTCG
TCGAGAAGTCCGGTGCTTGGTTCTCGTATGACTCGGTCCGTATCGGGCAAGGCCGCGAGAACGCGAAGACTTTCCTCAAA
GGCAATCCCGAGATGGCCGGTAAGATCGAGGTATCGATCCGCCAGAATGCGGGTCTGATCGCCGAAAAGATCTTGGCCGG
CGAGCCGGAAGAAGAGGACGACGGCGAGCCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S3PV61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

66.957

96.639

0.647
  recA Neisseria gonorrhoeae MS11

66.957

96.639

0.647
  recA Neisseria gonorrhoeae strain FA1090

66.957

96.639

0.647
  recA Ralstonia pseudosolanacearum GMI1000

68.598

91.877

0.63
  recA Vibrio cholerae strain A1552

66.467

93.557

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.467

93.557

0.622
  recA Acinetobacter baumannii D1279779

63.401

97.199

0.616
  recA Pseudomonas stutzeri DSM 10701

68.438

89.636

0.613
  recA Glaesserella parasuis strain SC1401

64.602

94.958

0.613
  recA Acinetobacter baylyi ADP1

63.529

95.238

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

96.078

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

65.231

91.036

0.594
  recA Helicobacter pylori strain NCTC11637

61.765

95.238

0.588
  recA Helicobacter pylori 26695

61.471

95.238

0.585
  recA Streptococcus pneumoniae Rx1

58.79

97.199

0.571
  recA Streptococcus pneumoniae TIGR4

58.79

97.199

0.571
  recA Streptococcus pneumoniae R6

58.79

97.199

0.571
  recA Streptococcus pneumoniae D39

58.79

97.199

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

91.597

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.036

0.566
  recA Streptococcus mitis NCTC 12261

60.909

92.437

0.563
  recA Streptococcus mitis SK321

60.909

92.437

0.563
  recA Streptococcus mutans UA159

59.639

92.997

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.815

89.356

0.543
  recA Streptococcus pyogenes NZ131

59.146

91.877

0.543
  recA Lactococcus lactis subsp. cremoris KW2

58.485

92.437

0.541

Multiple sequence alignment