Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUO14_RS23395 Genome accession   NZ_CP095074
Coordinates   4718997..4720043 (+) Length   348 a.a.
NCBI ID   WP_244752887.1    Uniprot ID   -
Organism   Halobacillus shinanisalinarum strain SSTM10-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4713997..4725043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO14_RS23370 (MUO14_23370) - 4714781..4715041 (+) 261 WP_244752883.1 DUF3243 domain-containing protein -
  MUO14_RS23375 (MUO14_23375) - 4715243..4716031 (+) 789 WP_244752884.1 DUF3388 domain-containing protein -
  MUO14_RS23380 (MUO14_23380) - 4716050..4716931 (+) 882 WP_244752885.1 RodZ family helix-turn-helix domain-containing protein -
  MUO14_RS23385 (MUO14_23385) pgsA 4717028..4717605 (+) 578 Protein_4650 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUO14_RS23390 (MUO14_23390) - 4717602..4718831 (+) 1230 WP_244752886.1 competence/damage-inducible protein A -
  MUO14_RS23395 (MUO14_23395) recA 4718997..4720043 (+) 1047 WP_244752887.1 recombinase RecA Machinery gene
  MUO14_RS23400 (MUO14_23400) rny 4720476..4722035 (+) 1560 WP_244752888.1 ribonuclease Y -
  MUO14_RS23405 (MUO14_23405) - 4722125..4722922 (+) 798 WP_244752889.1 TIGR00282 family metallophosphoesterase -
  MUO14_RS23410 (MUO14_23410) - 4723032..4723291 (+) 260 Protein_4655 stage V sporulation protein S -
  MUO14_RS23415 (MUO14_23415) tdh 4723542..4724582 (+) 1041 WP_244752890.1 L-threonine 3-dehydrogenase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37919.01 Da        Isoelectric Point: 5.2345

>NTDB_id=675027 MUO14_RS23395 WP_244752887.1 4718997..4720043(+) (recA) [Halobacillus shinanisalinarum strain SSTM10-2]
MSDRKQALDMALRQIEKQFGKGSIMKLGEQAEQRISTVSSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIAE
AQRQGGQAAFIDAEHALDPVYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDMVVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGDEMVGNKT
RLKVVKNKVAPPFKKAEVDIMYGEGISREGELLDIGTDLDLVQKSGSWYSYNNERMGQGRENAKKYLKENEEVYQEIKGL
VRAHYDMDGSSAEEKKEKTSESQESLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=675027 MUO14_RS23395 WP_244752887.1 4718997..4720043(+) (recA) [Halobacillus shinanisalinarum strain SSTM10-2]
ATGAGTGATCGTAAGCAAGCGTTAGATATGGCATTAAGACAAATTGAGAAACAATTTGGTAAAGGATCGATTATGAAGCT
TGGGGAACAGGCTGAACAAAGAATAAGTACAGTTTCCAGCGGATCGCTTGCCCTTGATGTAGCTCTAGGTGTGGGTGGGT
ATCCTCGCGGCAGAATTGTTGAAATATATGGACCAGAATCCTCTGGTAAAACGACAGTTGCCTTACACGCAATTGCCGAA
GCTCAAAGACAAGGTGGACAAGCAGCTTTTATTGATGCAGAGCACGCGCTTGACCCGGTTTATGCACGAGCGCTTGGTGT
AGATATTGAGGAGCTATTGCTGTCACAGCCTGATACAGGGGAACAAGCATTGGAAATTGCCGAAGCGTTGGTACGTAGCG
GTGCTGTTGATATGGTAGTTGTCGATTCTGTAGCTGCCCTTGTACCGAAGGCTGAAATTGAAGGCGAGATGGGTGATGCC
CACGTGGGTCTTCAGGCTCGTTTAATGTCCCAAGCTTTGAGAAAACTATCTGGTGCGATTAATAAATCGAAAACGACAGC
GATCTTTATTAACCAAATTCGTGAAAAGGTCGGTGTGATGTTTGGTAACCCTGAAACGACGCCTGGGGGCCGTGCACTTA
AATTCTATTCATCTGTAAGACTAGAAGTACGCCGCGCCGAAACGTTAAAACAAGGCGATGAAATGGTAGGGAACAAAACG
AGATTAAAAGTTGTTAAAAACAAAGTAGCTCCCCCATTCAAGAAAGCTGAAGTTGACATTATGTACGGGGAAGGGATCTC
AAGAGAAGGTGAATTATTAGATATCGGTACTGATCTAGACTTAGTTCAAAAGAGTGGATCCTGGTATTCTTACAATAATG
AAAGAATGGGTCAGGGACGAGAAAATGCCAAAAAGTACTTGAAGGAAAATGAAGAGGTGTATCAAGAAATTAAAGGATTA
GTCCGAGCGCATTATGATATGGATGGCTCCTCTGCCGAAGAAAAGAAAGAAAAGACTTCTGAAAGTCAAGAATCTCTCGA
TGTATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.03

94.828

0.787
  recA Latilactobacillus sakei subsp. sakei 23K

73.684

98.276

0.724
  recA Streptococcus pneumoniae TIGR4

65.47

100

0.681
  recA Streptococcus pneumoniae Rx1

65.47

100

0.681
  recA Streptococcus pneumoniae D39

65.47

100

0.681
  recA Streptococcus pneumoniae R6

65.47

100

0.681
  recA Streptococcus mitis NCTC 12261

68.497

99.425

0.681
  recA Streptococcus mitis SK321

69.501

97.989

0.681
  recA Streptococcus mutans UA159

67.236

100

0.678
  recA Streptococcus pyogenes NZ131

69.725

93.966

0.655
  recA Lactococcus lactis subsp. cremoris KW2

68.182

94.828

0.647
  recA Neisseria gonorrhoeae strain FA1090

68.012

92.529

0.629
  recA Neisseria gonorrhoeae MS11

68.012

92.529

0.629
  recA Neisseria gonorrhoeae MS11

68.012

92.529

0.629
  recA Pseudomonas stutzeri DSM 10701

62.428

99.425

0.621
  recA Glaesserella parasuis strain SC1401

62.029

99.138

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.938

91.954

0.606
  recA Vibrio cholerae strain A1552

65.938

91.954

0.606
  recA Ralstonia pseudosolanacearum GMI1000

68.065

89.08

0.606
  recA Acinetobacter baylyi ADP1

59.77

100

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.497

93.678

0.595
  recA Acinetobacter baumannii D1279779

61.702

94.54

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.89

94.253

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

92.529

0.578
  recA Helicobacter pylori strain NCTC11637

63.291

90.805

0.575
  recA Helicobacter pylori 26695

63.291

90.805

0.575