Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUN88_RS17405 Genome accession   NZ_CP095072
Coordinates   3629782..3630825 (-) Length   347 a.a.
NCBI ID   WP_305852475.1    Uniprot ID   -
Organism   Gracilibacillus caseinilyticus strain SSWR10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3624782..3635825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN88_RS17385 (MUN88_17385) - 3625078..3625962 (-) 885 WP_244717331.1 dipeptidase -
  MUN88_RS17390 (MUN88_17390) - 3626066..3626326 (-) 261 WP_244717333.1 stage V sporulation protein S -
  MUN88_RS17395 (MUN88_17395) - 3626451..3627248 (-) 798 WP_244717335.1 TIGR00282 family metallophosphoesterase -
  MUN88_RS17400 (MUN88_17400) rny 3627952..3629508 (-) 1557 WP_244717337.1 ribonuclease Y -
  MUN88_RS17405 (MUN88_17405) recA 3629782..3630825 (-) 1044 WP_305852475.1 recombinase RecA Machinery gene
  MUN88_RS17410 (MUN88_17410) - 3631017..3632264 (-) 1248 WP_244717339.1 competence/damage-inducible protein A -
  MUN88_RS17415 (MUN88_17415) pgsA 3632264..3632842 (-) 579 WP_244717342.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUN88_RS17420 (MUN88_17420) - 3632911..3633819 (-) 909 WP_244717345.1 RodZ domain-containing protein -
  MUN88_RS17425 (MUN88_17425) - 3634076..3634333 (-) 258 WP_244717348.1 DUF3243 domain-containing protein -
  MUN88_RS17430 (MUN88_17430) ymfI 3634425..3635144 (-) 720 WP_244717351.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37641.71 Da        Isoelectric Point: 4.9112

>NTDB_id=674940 MUN88_RS17405 WP_305852475.1 3629782..3630825(-) (recA) [Gracilibacillus caseinilyticus strain SSWR10-1]
MSDRKQALDMALKQIEKQFGKGSIMKLGEQAEQKIATVSSGSIAVDVALGVGGYPRGRVVEIYGPESSGKTTVSLHAIAE
AQRAGGQAAFIDAEHALDPVYARNLGVNVDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKVGNEMVGNRT
RIKVVKNKVAPPFKQAEVDIMYGEGISRPGEILDIGSDLDIVVKSGAWYSYNDERLGQGRENAKQFLKERPEVLNEIYQA
IRAHYDIGDASEEADDNKEMQDSLLEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=674940 MUN88_RS17405 WP_305852475.1 3629782..3630825(-) (recA) [Gracilibacillus caseinilyticus strain SSWR10-1]
GTGAGTGATAGAAAACAAGCCTTGGATATGGCGTTAAAACAAATTGAGAAACAGTTCGGTAAAGGTTCAATCATGAAGCT
TGGTGAGCAAGCGGAACAAAAGATTGCAACAGTATCAAGTGGGTCAATTGCTGTCGATGTTGCTTTAGGAGTTGGCGGTT
ATCCGCGAGGCCGAGTTGTTGAAATATATGGTCCAGAGTCTTCTGGTAAAACTACGGTTTCTTTACATGCCATTGCTGAA
GCGCAACGTGCTGGTGGACAGGCTGCCTTTATCGATGCGGAGCATGCACTTGATCCAGTTTATGCGAGAAATCTAGGAGT
AAATGTTGATGAGTTATTACTATCTCAGCCGGACACGGGAGAACAGGCTTTGGAAATTGCTGAAGCACTTGTTCGAAGTG
GTGCGGTTGATATGCTTGTTATTGATTCGGTAGCAGCGTTAGTACCTAAAGCAGAAATCGAAGGGGAAATGGGTGATGCG
CATGTTGGGCTTCAAGCGCGTTTAATGTCACAGGCATTGCGTAAATTGTCTGGTGCCATTAATAAATCCAAAACAACTGC
GATCTTCATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTCGGGAACCCGGAAACGACGCCAGGTGGTAGAGCTCTTA
AATTCTATTCGTCTGTTCGTCTGGAAGTAAGACGTGCCGAAACGTTAAAAGTCGGGAATGAAATGGTCGGGAATAGAACA
AGAATTAAGGTTGTCAAAAATAAAGTGGCACCACCTTTCAAGCAAGCAGAAGTAGATATCATGTACGGAGAAGGTATTTC
ACGTCCAGGTGAAATATTAGATATTGGTTCGGACTTGGACATCGTTGTCAAAAGTGGTGCCTGGTATTCGTATAATGATG
AAAGACTTGGACAAGGACGGGAAAATGCGAAGCAATTCCTGAAAGAACGCCCAGAAGTATTAAACGAAATCTATCAAGCA
ATTCGTGCGCATTACGATATCGGTGATGCGAGTGAAGAAGCGGATGATAATAAAGAAATGCAAGATAGCTTGCTAGAGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.04

94.236

0.764
  recA Latilactobacillus sakei subsp. sakei 23K

74.018

95.389

0.706
  recA Streptococcus mitis SK321

67.836

98.559

0.669
  recA Streptococcus mutans UA159

67.246

99.424

0.669
  recA Streptococcus pneumoniae TIGR4

67.544

98.559

0.666
  recA Streptococcus pneumoniae D39

67.544

98.559

0.666
  recA Streptococcus mitis NCTC 12261

67.544

98.559

0.666
  recA Streptococcus pneumoniae Rx1

67.544

98.559

0.666
  recA Streptococcus pneumoniae R6

67.544

98.559

0.666
  recA Streptococcus pyogenes NZ131

66.092

100

0.663
  recA Lactococcus lactis subsp. cremoris KW2

67.062

97.118

0.651
  recA Neisseria gonorrhoeae strain FA1090

67.081

92.795

0.622
  recA Neisseria gonorrhoeae MS11

67.081

92.795

0.622
  recA Neisseria gonorrhoeae MS11

67.081

92.795

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.717

97.695

0.622
  recA Ralstonia pseudosolanacearum GMI1000

64.095

97.118

0.622
  recA Pseudomonas stutzeri DSM 10701

63.855

95.677

0.611
  recA Glaesserella parasuis strain SC1401

64.89

91.931

0.597
  recA Acinetobacter baylyi ADP1

59.312

100

0.597
  recA Vibrio cholerae strain A1552

64.375

92.219

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.375

92.219

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.577

93.948

0.588
  recA Helicobacter pylori strain NCTC11637

62.617

92.507

0.579
  recA Helicobacter pylori 26695

62.617

92.507

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.976

94.524

0.576
  recA Acinetobacter baumannii D1279779

60.938

92.219

0.562