Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUN83_RS13770 Genome accession   NZ_CP095056
Coordinates   3239225..3240313 (+) Length   362 a.a.
NCBI ID   WP_171590189.1    Uniprot ID   -
Organism   Hymenobacter sp. 5414T-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3234225..3245313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN83_RS13745 (MUN83_13745) - 3234559..3235527 (+) 969 WP_171590184.1 AAA family ATPase -
  MUN83_RS13750 (MUN83_13750) - 3235633..3236070 (+) 438 WP_171590185.1 hypothetical protein -
  MUN83_RS13755 (MUN83_13755) - 3236168..3237052 (-) 885 WP_171590186.1 SDR family NAD(P)-dependent oxidoreductase -
  MUN83_RS13760 (MUN83_13760) - 3237245..3237823 (+) 579 WP_171590187.1 GNAT family N-acetyltransferase -
  MUN83_RS13765 (MUN83_13765) - 3237855..3239024 (-) 1170 WP_171590188.1 hypothetical protein -
  MUN83_RS13770 (MUN83_13770) recA 3239225..3240313 (+) 1089 WP_171590189.1 recombinase RecA Machinery gene
  MUN83_RS13775 (MUN83_13775) - 3240516..3241343 (+) 828 WP_171590190.1 DUF3108 domain-containing protein -
  MUN83_RS13780 (MUN83_13780) - 3241593..3242291 (+) 699 WP_244679353.1 response regulator transcription factor -
  MUN83_RS13785 (MUN83_13785) - 3242449..3243531 (+) 1083 WP_171590192.1 sensor histidine kinase -
  MUN83_RS13790 (MUN83_13790) - 3243649..3244362 (+) 714 WP_171590193.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38699.47 Da        Isoelectric Point: 4.9700

>NTDB_id=674859 MUN83_RS13770 WP_171590189.1 3239225..3240313(+) (recA) [Hymenobacter sp. 5414T-23]
MAATTDKAVNANAEKMKALQLTLDKLDKNYGKGTVMKLSDNKVMDVEVISTGSLGLDIALGVGGLPKGRVVEIYGPESSG
KTTLTMHAIAEAQKKGGIAAFIDAEHAFDPLYAKKLGIDTENLLIAQPDNGEQALEIADQLISSGAIDIIVIDSVAALVP
KGELEGDMGDSKVGLHARLMSQALRKLTGTINKTGCCCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQI
KEDKDNVTGNRTKVKVVKNKVAPPFKVIEFDIIYNEGISKVGEILDLGVDMGIIAKSGSWFSYDGNRLGQGREGVKTILQ
DNPELADKIEAQIRAMVKGEPEAALAAIPEDRSIGDDDTVEI

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=674859 MUN83_RS13770 WP_171590189.1 3239225..3240313(+) (recA) [Hymenobacter sp. 5414T-23]
ATGGCTGCAACCACTGACAAGGCCGTCAACGCCAATGCCGAGAAAATGAAAGCCCTCCAGCTGACGCTGGACAAGCTGGA
CAAGAACTACGGCAAAGGCACCGTGATGAAGCTCAGCGACAACAAGGTGATGGACGTCGAAGTCATCAGTACCGGCTCGC
TGGGTCTGGATATTGCCCTGGGCGTGGGTGGCCTGCCCAAAGGCCGCGTAGTGGAAATCTACGGCCCAGAATCGTCGGGT
AAGACGACTCTGACCATGCACGCTATTGCCGAAGCGCAGAAGAAAGGTGGCATCGCAGCCTTCATCGACGCTGAGCACGC
TTTCGACCCACTGTATGCCAAGAAGCTCGGCATCGACACAGAGAACCTGCTAATTGCTCAGCCCGACAATGGTGAGCAAG
CCCTGGAAATTGCCGACCAGCTGATTTCCTCCGGTGCCATCGACATTATCGTAATTGACTCCGTAGCTGCCCTGGTGCCG
AAAGGCGAACTGGAAGGCGACATGGGTGACTCCAAAGTAGGTCTGCACGCTCGTCTGATGTCACAGGCCCTGCGGAAGCT
CACGGGTACCATCAACAAAACCGGCTGCTGCTGCATTTTCATCAACCAGCTGCGTGAGAAGATTGGCGTAATGTTCGGCT
CGCCCGAAACTACCACCGGCGGTAATGCTCTAAAATTCTACGCTTCCGTACGCCTCGATATCCGTCGGATTGGCCAGATC
AAGGAAGACAAGGACAACGTAACCGGTAACCGTACCAAGGTGAAGGTGGTGAAGAACAAAGTGGCTCCTCCCTTCAAAGT
GATTGAGTTCGATATCATCTACAACGAGGGCATTTCGAAAGTAGGTGAGATTCTTGATCTGGGCGTTGACATGGGCATTA
TTGCCAAGTCGGGCTCGTGGTTCTCGTACGACGGCAACCGCCTGGGCCAGGGCCGCGAAGGTGTAAAAACCATTCTGCAG
GACAACCCCGAGCTAGCCGATAAAATTGAAGCGCAAATCCGGGCCATGGTAAAAGGTGAGCCGGAAGCTGCTCTGGCAGC
TATTCCCGAAGACCGCTCCATAGGTGACGACGACACCGTGGAAATCTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

71.681

93.646

0.671
  recA Ralstonia pseudosolanacearum GMI1000

65.487

93.646

0.613
  recA Glaesserella parasuis strain SC1401

61.494

96.133

0.591
  recA Acinetobacter baylyi ADP1

65.938

88.398

0.583
  recA Neisseria gonorrhoeae MS11

64.815

89.503

0.58
  recA Neisseria gonorrhoeae strain FA1090

64.815

89.503

0.58
  recA Neisseria gonorrhoeae MS11

64.815

89.503

0.58
  recA Acinetobacter baumannii D1279779

65.625

88.398

0.58
  recA Vibrio cholerae strain A1552

59.767

94.751

0.566
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.767

94.751

0.566
  recA Pseudomonas stutzeri DSM 10701

63.24

88.674

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

57.062

97.79

0.558
  recA Streptococcus mitis SK321

59.644

93.094

0.555
  recA Helicobacter pylori 26695

60.542

91.713

0.555
  recA Helicobacter pylori strain NCTC11637

60.542

91.713

0.555
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

88.95

0.552
  recA Streptococcus pyogenes NZ131

61.728

89.503

0.552
  recA Streptococcus mutans UA159

61.42

89.503

0.55
  recA Streptococcus mitis NCTC 12261

61.231

89.779

0.55
  recA Lactococcus lactis subsp. cremoris KW2

61.043

90.055

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.682

88.674

0.547
  recA Streptococcus pneumoniae D39

60.123

90.055

0.541
  recA Streptococcus pneumoniae Rx1

60.123

90.055

0.541
  recA Streptococcus pneumoniae R6

60.123

90.055

0.541
  recA Streptococcus pneumoniae TIGR4

60.123

90.055

0.541
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.308

89.779

0.506