Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUN81_RS03210 Genome accession   NZ_CP095050
Coordinates   800122..801219 (-) Length   365 a.a.
NCBI ID   WP_245114956.1    Uniprot ID   A0A8T9SCF0
Organism   Hymenobacter sp. 5317J-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 795122..806219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUN81_RS03185 (MUN81_03185) - 795616..796329 (-) 714 WP_245114946.1 RluA family pseudouridine synthase -
  MUN81_RS03190 (MUN81_03190) - 796411..797469 (-) 1059 WP_245114948.1 ATP-binding protein -
  MUN81_RS03195 (MUN81_03195) - 797601..798296 (-) 696 WP_245114950.1 response regulator transcription factor -
  MUN81_RS03200 (MUN81_03200) - 798412..799083 (-) 672 WP_245114952.1 hypothetical protein -
  MUN81_RS03205 (MUN81_03205) - 799172..799987 (-) 816 WP_245114954.1 DUF3108 domain-containing protein -
  MUN81_RS03210 (MUN81_03210) recA 800122..801219 (-) 1098 WP_245114956.1 recombinase RecA Machinery gene
  MUN81_RS03215 (MUN81_03215) - 801569..802600 (+) 1032 WP_245114958.1 hypothetical protein -
  MUN81_RS03220 (MUN81_03220) - 802601..803149 (-) 549 WP_245114960.1 GNAT family N-acetyltransferase -
  MUN81_RS03225 (MUN81_03225) - 803256..803681 (-) 426 WP_245114962.1 hypothetical protein -
  MUN81_RS03230 (MUN81_03230) - 803818..804783 (-) 966 WP_245114964.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 38797.58 Da        Isoelectric Point: 5.0681

>NTDB_id=674843 MUN81_RS03210 WP_245114956.1 800122..801219(-) (recA) [Hymenobacter sp. 5317J-9]
MAVATEKASKADKAETNVAAEKMKALQLTLDKLDKAYGKGTVMKLSDNKVGDIPSISTGSLSLDIALGIGGVPRGRVIEI
YGPESSGKTTLTMHMIAEAQKKGGMAAFIDAEHAFDKSYAEKLGIDTTNLLIAQPDNGEQALEIADQLISSGAIDIIVID
SVAALVPKGELEGDMGDSKVGLHARLMSQALRKLTGTINKTGCACIFINQLREKIGVMFGSPETTTGGNALKFYASVRLD
IRRIGQIKEDKDNVTGNRTKVKVVKNKVAPPFKVVEFDIIYGQGISKVGEIVDLGVDMGIIAKSGSWFSYGDQKIGQGRE
AVKTLLLDNPELADEIEGKIRTMAKGDADVIPVDMAGPEDGEDTL

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=674843 MUN81_RS03210 WP_245114956.1 800122..801219(-) (recA) [Hymenobacter sp. 5317J-9]
ATGGCAGTAGCTACCGAAAAGGCCTCGAAAGCCGACAAGGCGGAGACCAACGTCGCAGCCGAAAAAATGAAAGCCCTCCA
GCTCACGCTCGACAAGCTGGACAAAGCCTACGGCAAAGGCACCGTGATGAAGCTCAGCGACAACAAAGTGGGCGACATCC
CGAGCATCAGCACCGGTTCGCTCTCGCTCGACATTGCTCTGGGCATTGGCGGCGTGCCCCGCGGCCGCGTGATTGAAATT
TACGGTCCGGAATCGTCGGGTAAGACGACCCTGACCATGCACATGATTGCCGAGGCGCAAAAGAAAGGCGGCATGGCGGC
CTTCATCGACGCCGAGCACGCTTTCGACAAATCCTACGCCGAGAAACTCGGCATCGACACCACCAACCTGCTCATCGCCC
AGCCTGATAACGGCGAACAAGCCCTCGAAATCGCCGACCAGTTGATTTCGTCGGGTGCGATTGACATCATCGTCATTGAC
TCCGTGGCGGCCCTCGTGCCGAAAGGCGAACTCGAAGGCGACATGGGCGACTCGAAAGTGGGCCTGCACGCCCGCCTTAT
GAGCCAGGCCCTGCGCAAGCTCACCGGCACCATCAACAAGACCGGTTGCGCCTGCATTTTCATCAACCAGCTGCGTGAGA
AAATCGGCGTAATGTTCGGCTCGCCCGAAACCACCACCGGCGGTAACGCCCTGAAATTCTACGCTTCCGTGCGCCTCGAC
ATCCGCCGCATTGGCCAAATCAAGGAAGACAAGGACAACGTGACCGGCAACCGCACCAAGGTGAAGGTGGTGAAGAACAA
AGTGGCCCCGCCCTTTAAGGTGGTCGAGTTCGACATCATCTACGGCCAAGGCATCTCGAAAGTCGGTGAGATTGTGGACC
TCGGCGTCGACATGGGCATCATTGCCAAGTCGGGCTCGTGGTTCAGCTACGGCGACCAGAAAATCGGGCAGGGCCGCGAA
GCCGTGAAGACGTTGCTGCTCGACAACCCCGAGCTGGCCGACGAAATCGAAGGCAAGATTCGCACCATGGCCAAGGGCGA
TGCCGACGTCATCCCTGTGGACATGGCCGGCCCCGAAGACGGCGAAGACACGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

72.086

89.315

0.644
  recA Ralstonia pseudosolanacearum GMI1000

65.653

90.137

0.592
  recA Glaesserella parasuis strain SC1401

59.28

98.904

0.586
  recA Acinetobacter baumannii D1279779

65.312

87.671

0.573
  recA Acinetobacter baylyi ADP1

64.688

87.671

0.567
  recA Helicobacter pylori 26695

61.677

91.507

0.564
  recA Helicobacter pylori strain NCTC11637

61.377

91.507

0.562
  recA Pseudomonas stutzeri DSM 10701

63.438

87.671

0.556
  recA Neisseria gonorrhoeae strain FA1090

62.654

88.767

0.556
  recA Neisseria gonorrhoeae MS11

62.654

88.767

0.556
  recA Neisseria gonorrhoeae MS11

62.654

88.767

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.733

88.219

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

59.118

93.151

0.551
  recA Streptococcus mitis NCTC 12261

58.358

93.425

0.545
  recA Streptococcus pyogenes NZ131

61.231

89.041

0.545
  recA Streptococcus mitis SK321

58.065

93.425

0.542
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

88.219

0.542
  recA Vibrio cholerae strain A1552

60.87

88.219

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.87

88.219

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.31

93.699

0.537
  recA Streptococcus pneumoniae Rx1

57.522

92.877

0.534
  recA Streptococcus pneumoniae D39

57.522

92.877

0.534
  recA Streptococcus pneumoniae TIGR4

57.522

92.877

0.534
  recA Streptococcus pneumoniae R6

57.522

92.877

0.534
  recA Streptococcus mutans UA159

60.185

88.767

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.44

92.055

0.529