Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MTZ49_RS07970 Genome accession   NZ_CP094972
Coordinates   1671270..1672301 (-) Length   343 a.a.
NCBI ID   WP_264745026.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666270..1677301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS07950 (MTZ49_07945) - 1666576..1668228 (+) 1653 WP_264745022.1 electron transfer flavoprotein-ubiquinone oxidoreductase -
  MTZ49_RS07955 (MTZ49_07950) - 1668297..1669292 (-) 996 WP_264745023.1 M28 family peptidase -
  MTZ49_RS07960 (MTZ49_07955) - 1669441..1670673 (-) 1233 WP_264745024.1 sugar transporter -
  MTZ49_RS07965 (MTZ49_07960) recX 1670817..1671266 (-) 450 WP_264745025.1 recombination regulator RecX -
  MTZ49_RS07970 (MTZ49_07965) recA 1671270..1672301 (-) 1032 WP_264745026.1 recombinase RecA Machinery gene
  MTZ49_RS07975 (MTZ49_07970) - 1672405..1672908 (-) 504 WP_264745027.1 CinA family protein -
  MTZ49_RS07980 (MTZ49_07975) - 1672920..1673699 (-) 780 WP_264745028.1 ABC transporter permease -
  MTZ49_RS07985 (MTZ49_07980) - 1673696..1674631 (-) 936 WP_264745029.1 ABC transporter ATP-binding protein -
  MTZ49_RS07990 (MTZ49_07985) - 1674826..1675971 (+) 1146 WP_264745030.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  MTZ49_RS07995 (MTZ49_07990) - 1676028..1676576 (+) 549 WP_264745031.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36944.33 Da        Isoelectric Point: 5.1689

>NTDB_id=674627 MTZ49_RS07970 WP_264745026.1 1671270..1672301(-) (recA) [Entomomonas sp. E2T0]
MEENKKRALAAALTQIERQFGKGAVMRMGDQERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKQGCVCAFVDAEHALDPEYAGKLGVNVDDLYVAQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHMGLQARLMSQALRKITGNIKTANCLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSVKEGDEVTGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRTGEIIDLGVQLGLVEKAGAWYSYDGKKIGQGKANASKFLEENPEITKTLET
TIREKLLSQPVPITESNDTAAED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=674627 MTZ49_RS07970 WP_264745026.1 1671270..1672301(-) (recA) [Entomomonas sp. E2T0]
ATGGAAGAGAATAAAAAGCGCGCACTAGCCGCTGCTTTAACACAGATTGAACGGCAATTCGGTAAAGGTGCTGTAATGCG
TATGGGTGACCAAGAGCGCCAAGCTATTCCTGCCATTTCTACTGGTTCATTGGGGCTAGATATTGCCCTTGGTATTGGTG
GTTTACCTAAAGGTCGTATTGTTGAGATTTATGGCCCCGAGTCTTCTGGTAAAACTACCTTAACCTTATCAGTTATTGCA
GAAGCACAAAAGCAAGGTTGTGTATGTGCCTTCGTAGACGCTGAACATGCATTAGACCCAGAATATGCAGGTAAATTAGG
GGTTAATGTTGATGATCTCTATGTTGCTCAACCAGATACAGGTGAGCAAGCACTTGAAATTACTGACATGCTTGTACGTT
CAAATGCTGTAGACGTTATTATTGTTGACTCTGTAGCCGCCCTTGTACCTAAAGCTGAAATTGAAGGCGAAATGGGTGAC
TCTCATATGGGTTTACAAGCGCGTTTAATGTCACAAGCATTACGTAAAATCACAGGTAATATCAAAACCGCTAACTGTTT
AGTTATCTTTATTAACCAAATTCGTATGAAAATTGGTGTAATGTTTGGTAACCCTGAAACAACTACAGGTGGTAATGCTC
TTAAATTCTATGCTTCTGTACGTTTAGATATTCGTCGTACAGGTTCAGTAAAAGAAGGTGATGAAGTTACAGGTAGTGAA
ACACGCGTTAAAGTGGTTAAAAACAAAGTAGCGCCTCCTTTCCGTCAAGCTGAATTCCAAATCCTTTATGGTAAAGGTAT
TTATCGTACAGGTGAAATTATTGACCTTGGCGTACAGCTTGGCTTAGTTGAAAAAGCAGGTGCATGGTATAGCTATGATG
GTAAGAAAATTGGTCAAGGTAAAGCCAATGCTTCTAAATTCTTAGAAGAAAATCCAGAGATTACCAAAACACTAGAAACA
ACTATCCGTGAAAAATTATTAAGCCAACCAGTACCTATTACTGAAAGTAATGATACGGCTGCTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

86.127

100

0.869
  recA Acinetobacter baylyi ADP1

73.178

100

0.732
  recA Vibrio cholerae strain A1552

71.802

100

0.72
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.802

100

0.72
  recA Glaesserella parasuis strain SC1401

71.848

99.417

0.714
  recA Acinetobacter baumannii D1279779

74.695

95.627

0.714
  recA Ralstonia pseudosolanacearum GMI1000

69.706

99.125

0.691
  recA Neisseria gonorrhoeae MS11

71.605

94.461

0.676
  recA Neisseria gonorrhoeae MS11

71.605

94.461

0.676
  recA Neisseria gonorrhoeae strain FA1090

71.605

94.461

0.676
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

95.335

0.618
  recA Helicobacter pylori strain NCTC11637

60.831

98.251

0.598
  recA Helicobacter pylori 26695

60.831

98.251

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

96.21

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

93.586

0.589
  recA Streptococcus mutans UA159

60

94.752

0.569
  recA Streptococcus pyogenes NZ131

58.537

95.627

0.56
  recA Streptococcus pneumoniae Rx1

58.589

95.044

0.557
  recA Streptococcus pneumoniae D39

58.589

95.044

0.557
  recA Streptococcus pneumoniae R6

58.589

95.044

0.557
  recA Streptococcus pneumoniae TIGR4

58.589

95.044

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

57.1

96.501

0.551
  recA Streptococcus mitis NCTC 12261

58.514

94.169

0.551
  recA Streptococcus mitis SK321

58.204

94.169

0.548
  recA Lactococcus lactis subsp. cremoris KW2

56.347

94.169

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.046

95.335

0.525