Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LEN_RS09145 Genome accession   NZ_AP014940
Coordinates   2187792..2188820 (+) Length   342 a.a.
NCBI ID   WP_096377520.1    Uniprot ID   A0AAU9ATE2
Organism   Lysobacter enzymogenes strain M497-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182792..2193820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEN_RS09125 (LEN_1855) - 2184731..2185255 (+) 525 WP_096377517.1 CinA family protein -
  LEN_RS09130 (LEN_1856) - 2185770..2186741 (-) 972 WP_096377518.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  LEN_RS09135 (LEN_1857) lexA 2186857..2187519 (+) 663 WP_074864975.1 transcriptional repressor LexA -
  LEN_RS09140 (LEN_1858) - 2187516..2187755 (+) 240 WP_096377519.1 hypothetical protein -
  LEN_RS09145 (LEN_1859) recA 2187792..2188820 (+) 1029 WP_096377520.1 recombinase RecA Machinery gene
  LEN_RS25685 recX 2189331..2189831 (+) 501 WP_074866442.1 recombination regulator RecX -
  LEN_RS09155 (LEN_1861) alaS 2189995..2192628 (+) 2634 WP_096377522.1 alanine--tRNA ligase -
  LEN_RS09160 (LEN_1862) csrA 2192773..2192976 (+) 204 WP_057948118.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36763.33 Da        Isoelectric Point: 5.1945

>NTDB_id=67456 LEN_RS09145 WP_096377520.1 2187792..2188820(+) (recA) [Lysobacter enzymogenes strain M497-1]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRPVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKNGGTAAFIDAEHALDPIYAGKLGVNIDDLLVSQPDTGEQALEIADMLVRSAAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQIVTEILYGEGISREGELIDMGVEAKLVEKSGAWYSCDGERIGQGKENARQYLKENPEMAQRL
EANLREKFVPAEAARDEAAGED

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=67456 LEN_RS09145 WP_096377520.1 2187792..2188820(+) (recA) [Lysobacter enzymogenes strain M497-1]
ATGGACGAGAACAAGAAGCGCGCGCTTGCGGCGGCCCTGGGCCAGATCGAGAAGCAATTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCCCGGTCGAAGCCGCCGAGGTCATCGGCACCGGCTCGCTGATGCTCGACATCGCTCTGGGCATCGGCG
GCCTGCCGAAGGGCCGCGTGGTCGAAATCTACGGCCCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
CAGTGCCAGAAGAACGGCGGCACCGCCGCCTTCATCGATGCCGAGCACGCGCTCGACCCGATCTACGCCGGCAAGCTCGG
CGTCAACATCGACGACCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCGCCGACATGCTGGTGCGTT
CGGCCGCGGTCGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCGAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCGGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTGGTCAAGAACAAGCTGGCCCCGCCGTTCAAGCAGATCGTCACCGAAATCCTCTACGGCGA
GGGCATTTCGCGCGAGGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGTCGGGCGCCTGGTACAGCT
GCGACGGCGAACGCATCGGCCAGGGCAAGGAAAACGCCCGCCAGTACCTCAAGGAAAACCCCGAAATGGCCCAGCGGCTG
GAAGCCAATCTGCGCGAGAAGTTCGTGCCGGCCGAGGCCGCGCGCGACGAGGCCGCCGGCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

74.474

97.368

0.725
  recA Acinetobacter baylyi ADP1

71.637

100

0.716
  recA Vibrio cholerae strain A1552

72.892

97.076

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.892

97.076

0.708
  recA Acinetobacter baumannii D1279779

72.948

96.199

0.702
  recA Ralstonia pseudosolanacearum GMI1000

75.399

91.52

0.69
  recA Neisseria gonorrhoeae MS11

67.341

100

0.681
  recA Neisseria gonorrhoeae MS11

67.341

100

0.681
  recA Neisseria gonorrhoeae strain FA1090

67.341

100

0.681
  recA Glaesserella parasuis strain SC1401

69.659

94.444

0.658
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.562

93.567

0.623
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.363

97.368

0.617
  recA Helicobacter pylori strain NCTC11637

63.11

95.906

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

63.692

95.029

0.605
  recA Helicobacter pylori 26695

62.805

95.906

0.602
  recA Streptococcus mitis NCTC 12261

59.195

100

0.602
  recA Streptococcus mitis SK321

58.908

100

0.599
  recA Latilactobacillus sakei subsp. sakei 23K

60.479

97.661

0.591
  recA Streptococcus pneumoniae TIGR4

61.585

95.906

0.591
  recA Streptococcus pneumoniae Rx1

61.585

95.906

0.591
  recA Streptococcus pneumoniae D39

61.585

95.906

0.591
  recA Streptococcus pneumoniae R6

61.585

95.906

0.591
  recA Streptococcus mutans UA159

60.606

96.491

0.585
  recA Streptococcus pyogenes NZ131

60.303

96.491

0.582
  recA Lactococcus lactis subsp. cremoris KW2

60.308

95.029

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.875

93.275

0.558

Multiple sequence alignment