Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUB28_RS00365 Genome accession   NZ_CP094945
Coordinates   63322..64476 (+) Length   384 a.a.
NCBI ID   WP_002949056.1    Uniprot ID   A0AAN1ZW31
Organism   Streptococcus thermophilus strain VHProbi R08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58322..69476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB28_RS00340 (MUB28_00340) mutL 58322..60265 (+) 1944 WP_014607839.1 DNA mismatch repair endonuclease MutL -
  MUB28_RS00345 (MUB28_00345) - 60395..60616 (+) 222 WP_002949052.1 hypothetical protein -
  MUB28_RS00350 (MUB28_00350) ruvA 60768..61358 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA -
  MUB28_RS00355 (MUB28_00355) - 61365..61919 (+) 555 WP_011680604.1 DNA-3-methyladenine glycosylase I -
  MUB28_RS00360 (MUB28_00360) cinA 62015..63286 (+) 1272 WP_011680605.1 competence/damage-inducible protein A Machinery gene
  MUB28_RS00365 (MUB28_00365) recA 63322..64476 (+) 1155 WP_002949056.1 recombinase RecA Machinery gene
  MUB28_RS00370 (MUB28_00370) spx 64653..65051 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41470.03 Da        Isoelectric Point: 4.7444

>NTDB_id=674379 MUB28_RS00365 WP_002949056.1 63322..64476(+) (recA) [Streptococcus thermophilus strain VHProbi R08]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFAEIDHKVRVHYGLVELDEDDVVEDTQVEDTQVEDTSDELILDLDSTIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=674379 MUB28_RS00365 WP_002949056.1 63322..64476(+) (recA) [Streptococcus thermophilus strain VHProbi R08]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAGTTTGGTGATGAGCGTCGCAAAGCACTCGACGATGCATT
AAAAAACATTGAAAAAGATTTTGGTAAGGGTGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAAAAAGTTCAGGTTATGA
GCTCAGGATCACTAGCTTTGGATATTGCTCTTGGTGCGGGTGGTTACCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTTGCCCTTCATGCAGTTGCTCAGACTCAAAAAGAAGGTGGCATCGCAGCTTTTATCGA
TGCCGAGCATGCTCTTGACCCTGCGTATGCAGCAGCTCTAGGTGTTAATATCGATGAGCTTCTTTTGTCGCAGCCTGATT
CTGGTGAGCAAGGTCTCGAAATTGCAGGTAAGCTGATTGACTCTGGTGCAGTGGATTTAGTTGTTGTTGACTCAGTTGCG
GCCTTGGTACCACGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTAGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAACTTTCTGCATCTATTAATAAAACAAAAACGATTGCTATCTTTATTAACCAGTTGCGTGAAAAAGTTGGTA
TCATGTTTGGTAACCCAGAGACTACCCCAGGTGGACGTGCTTTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGT
AATACACAAATTAAAGGAACCGGTGACAAAAAGGACCAAAATGTTGGTAAGGAAACCAAGATTAAGGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAGAAGCTTTTGTTGAAATTATGTATGGCGAAGGAATTTCACAAACCGGTGAACTTGTAAAAA
TTGCAAGTGATATAGGCATTATTCAGAAAGCCGGAGCTTGGTTCTCATATAATGGGGAGAAAATTGGTCAAGGATCTGAA
AATGCTAAAAAGTATTTAGCAGATCACCCTGAGATTTTTGCAGAAATCGATCATAAAGTACGCGTACACTACGGTCTGGT
TGAGCTAGATGAGGACGATGTTGTTGAAGATACACAAGTTGAAGACACACAAGTTGAAGACACGTCTGATGAACTCATTC
TAGATCTTGATTCAACCATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

88.052

100

0.883
  recA Streptococcus pyogenes NZ131

88.021

100

0.88
  recA Streptococcus mitis SK321

85.64

99.74

0.854
  recA Streptococcus mitis NCTC 12261

85.64

99.74

0.854
  recA Streptococcus pneumoniae Rx1

84.715

100

0.852
  recA Streptococcus pneumoniae D39

84.715

100

0.852
  recA Streptococcus pneumoniae R6

84.715

100

0.852
  recA Streptococcus pneumoniae TIGR4

84.715

100

0.852
  recA Lactococcus lactis subsp. cremoris KW2

77.62

91.927

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

90.104

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.677

0.581
  recA Neisseria gonorrhoeae MS11

59.827

90.104

0.539
  recA Neisseria gonorrhoeae MS11

59.827

90.104

0.539
  recA Neisseria gonorrhoeae strain FA1090

59.827

90.104

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.177

88.281

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

84.115

0.526
  recA Glaesserella parasuis strain SC1401

59.412

88.542

0.526
  recA Acinetobacter baylyi ADP1

62.154

84.635

0.526
  recA Acinetobacter baumannii D1279779

62.154

84.635

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.598

88.802

0.503
  recA Pseudomonas stutzeri DSM 10701

58.462

84.635

0.495
  recA Ralstonia pseudosolanacearum GMI1000

57.576

85.938

0.495
  recA Helicobacter pylori 26695

56.667

85.938

0.487
  recA Helicobacter pylori strain NCTC11637

56.667

85.938

0.487