Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUB29_RS17510 Genome accession   NZ_CP094943
Coordinates   3985037..3986113 (-) Length   358 a.a.
NCBI ID   WP_226054982.1    Uniprot ID   -
Organism   Dickeya dadantii strain FZ06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3980037..3991113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB29_RS17490 csrA 3981236..3981421 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  MUB29_RS17495 alaS 3981743..3984370 (-) 2628 WP_263063483.1 alanine--tRNA ligase -
  MUB29_RS17500 - 3984320..3984472 (+) 153 WP_226054984.1 hypothetical protein -
  MUB29_RS17505 recX 3984508..3984993 (-) 486 WP_263063486.1 recombination regulator RecX -
  MUB29_RS17510 recA 3985037..3986113 (-) 1077 WP_226054982.1 recombinase RecA Machinery gene
  MUB29_RS17515 pncC 3986223..3986711 (-) 489 WP_263063487.1 nicotinamide-nucleotide amidase -
  MUB29_RS17520 - 3986961..3987425 (+) 465 WP_263063489.1 GNAT family N-acetyltransferase -
  MUB29_RS17525 - 3988909..3989421 (+) 513 WP_033112015.1 SRPBCC family protein -
  MUB29_RS17530 cybB 3989502..3990035 (-) 534 WP_038899898.1 cytochrome b561 -
  MUB29_RS17535 - 3990456..3991085 (-) 630 WP_161451089.1 LysE family translocator -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38393.87 Da        Isoelectric Point: 4.8157

>NTDB_id=674365 MUB29_RS17510 WP_226054982.1 3985037..3986113(-) (recA) [Dickeya dadantii strain FZ06]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGVGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRGGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTYGELVDLGVKFKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAISTEL
DKKLREMLLHKDNEAVPSASGESAEYNEEAAGELNDDF

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=674365 MUB29_RS17510 WP_226054982.1 3985037..3986113(-) (recA) [Dickeya dadantii strain FZ06]
ATGGCTATTGATGAGAACAAACAAAAGGCACTGGCGGCGGCGCTGGGTCAGATCGAGAAGCAATTCGGTAAAGGTTCTAT
CATGCGTTTGGGCGAAGATCGCTCAATGGATGTTGAAACGATCTCCACGGGCTCCCTGTCGCTCGATATCGCACTGGGTG
TCGGTGGTTTGCCGATGGGGCGTATTGTCGAAATCTACGGCCCGGAATCCTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCAGCCGCGCAGCGTGGAGGTAAAACCTGTGCGTTCATCGATGCCGAGCACGCGCTGGACCCGATCTACGCCAAGAA
ACTGGGCGTTGATATCGATAATCTGCTGTGTTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAAATTTGTGATGCGCTGG
CCCGCTCCGGCGCAGTGGATGTGATTATCGTTGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAGATCGAGGGGGAAATC
GGCGATTCGCATATGGGGTTGGCTGCGCGCATGATGAGCCAGGCCATGCGCAAACTGGCCGGTAACCTAAAACAATCCAA
TACACTGCTAATCTTTATCAACCAGATTCGTATGAAAATTGGCGTCATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCGCTGAAATTCTATGCTTCCGTCCGTCTGGATATCCGCCGCATCGGCTCGATTAAAGAAGGCGAAGAAGTGGTTGGG
AGCGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTTGCAGCACCGTTCAAACAGGCCGAATTCCAGATTCTGTATGGCGA
AGGGATCAATACCTACGGTGAACTGGTTGATCTGGGCGTGAAGTTTAAGCTGATTGAAAAAGCAGGCGCCTGGTACAGCT
ACAATGGTGACAAGATCGGTCAGGGCAAGGCTAACGCTTGCAATTTCCTGAAGGAAAATCCGGCTATCTCCACCGAGCTC
GACAAAAAGCTGCGCGAAATGTTGCTGCATAAGGATAATGAAGCCGTGCCGAGTGCTAGTGGCGAAAGCGCTGAGTACAA
TGAAGAAGCCGCAGGCGAACTCAACGACGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.799

95.81

0.793
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.799

95.81

0.793
  recA Pseudomonas stutzeri DSM 10701

73.451

94.693

0.696
  recA Acinetobacter baylyi ADP1

71.387

96.648

0.69
  recA Acinetobacter baumannii D1279779

73.394

91.341

0.67
  recA Glaesserella parasuis strain SC1401

68.091

98.045

0.668
  recA Neisseria gonorrhoeae MS11

70.245

91.061

0.64
  recA Neisseria gonorrhoeae MS11

70.245

91.061

0.64
  recA Neisseria gonorrhoeae strain FA1090

70.245

91.061

0.64
  recA Ralstonia pseudosolanacearum GMI1000

71.061

86.872

0.617
  recA Streptococcus pneumoniae D39

58.242

100

0.592
  recA Streptococcus pneumoniae TIGR4

58.242

100

0.592
  recA Streptococcus pneumoniae R6

58.242

100

0.592
  recA Streptococcus pneumoniae Rx1

58.242

100

0.592
  recA Streptococcus mitis SK321

58.611

100

0.589
  recA Streptococcus mitis NCTC 12261

58.056

100

0.584
  recA Streptococcus mutans UA159

59.375

98.324

0.584
  recA Helicobacter pylori 26695

62.691

91.341

0.573
  recA Helicobacter pylori strain NCTC11637

62.385

91.341

0.57
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.654

90.503

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

89.665

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60

93.575

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

90.782

0.559
  recA Streptococcus pyogenes NZ131

61.231

90.782

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.223

0.556
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

91.061

0.539