Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUK51_RS16360 Genome accession   NZ_CP094931
Coordinates   3819909..3820928 (+) Length   339 a.a.
NCBI ID   WP_094771512.1    Uniprot ID   -
Organism   Sphingobacterium faecium strain WB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3814909..3825928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUK51_RS16340 (MUK51_16280) - 3814918..3817050 (-) 2133 WP_260947258.1 S9 family peptidase -
  MUK51_RS16345 (MUK51_16285) - 3817218..3818849 (+) 1632 WP_094771509.1 S8 family serine peptidase -
  MUK51_RS16350 (MUK51_16290) - 3818922..3819104 (+) 183 WP_094771510.1 hypothetical protein -
  MUK51_RS16355 (MUK51_16295) nth 3819158..3819835 (+) 678 WP_094771511.1 endonuclease III -
  MUK51_RS16360 (MUK51_16300) recA 3819909..3820928 (+) 1020 WP_094771512.1 recombinase RecA Machinery gene
  MUK51_RS16365 (MUK51_16305) - 3821004..3821777 (+) 774 WP_052627657.1 endonuclease/exonuclease/phosphatase family protein -
  MUK51_RS16370 (MUK51_16310) - 3821784..3822965 (+) 1182 WP_260947278.1 metallophosphoesterase -
  MUK51_RS16375 (MUK51_16315) pruA 3823041..3824678 (-) 1638 WP_045754618.1 L-glutamate gamma-semialdehyde dehydrogenase -
  MUK51_RS16380 (MUK51_16320) msrA 3824776..3825441 (-) 666 WP_094771516.1 peptide-methionine (S)-S-oxide reductase MsrA -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36391.74 Da        Isoelectric Point: 4.8643

>NTDB_id=674304 MUK51_RS16360 WP_094771512.1 3819909..3820928(+) (recA) [Sphingobacterium faecium strain WB1]
MSNPDKLKALQLTLDKLEKSYGKGAIMKLGDAAVDAIESISTGSLGLDIALGIGGVPKGRIIEIYGPESSGKTTLATHIV
AEAQKAGGIAAFIDAEHAFDKYYAQKLGVDVENLLIAQPDNGEQALEIADNLIRSGAIDIIVIDSVAALVPKAEIEGEMG
DSKMGLQARLMSQALRKLTGTISKTNCCCIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRTSQIKDSDEVSGN
RVKVKIVKNKVAPPFRIAEFDIMFGEGISKVGEIIDLGVEYNIIKKAGSWFSYGETKLGQGRDAVKNLLHDNPDLADELE
AKIRAEVSGVDPNLVLEED

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=674304 MUK51_RS16360 WP_094771512.1 3819909..3820928(+) (recA) [Sphingobacterium faecium strain WB1]
ATGAGCAACCCAGATAAATTAAAAGCGTTACAGCTTACATTAGATAAATTAGAAAAATCATATGGCAAAGGTGCCATTAT
GAAGTTAGGAGATGCAGCTGTTGATGCTATCGAATCCATCTCTACAGGTTCTTTAGGTCTTGATATTGCATTAGGTATCG
GAGGTGTTCCTAAAGGTCGTATTATTGAAATATACGGTCCAGAATCTTCAGGTAAAACAACTCTAGCGACACATATCGTT
GCTGAAGCTCAAAAAGCAGGTGGCATTGCTGCATTTATCGATGCGGAACATGCTTTTGATAAATACTATGCACAAAAATT
AGGTGTTGACGTAGAAAATCTATTAATTGCCCAGCCTGATAATGGTGAACAAGCTTTAGAGATTGCAGATAACTTAATCC
GTTCGGGAGCTATTGACATTATTGTTATTGACTCTGTTGCGGCTTTAGTACCAAAAGCGGAGATTGAAGGTGAAATGGGT
GATTCAAAAATGGGTCTTCAGGCACGTTTGATGTCTCAAGCTTTACGTAAATTAACGGGTACGATTTCGAAAACAAACTG
CTGTTGTATTTTTATTAACCAACTTCGTGAAAAAATCGGTGTTATGTTTGGTAATCCTGAAACAACGACTGGTGGTAACG
CGTTGAAATTTTATGCATCTGTTCGTTTAGATATTCGTCGTACTTCTCAAATCAAAGATTCGGATGAAGTATCGGGTAAT
CGTGTGAAAGTAAAAATTGTTAAAAACAAAGTAGCTCCTCCGTTTCGTATTGCAGAATTTGATATCATGTTTGGAGAAGG
TATTTCTAAAGTTGGTGAAATCATCGATCTAGGTGTTGAATATAATATCATCAAAAAAGCGGGTTCATGGTTTAGCTATG
GAGAAACGAAATTAGGTCAAGGTCGTGATGCTGTAAAAAACTTATTGCATGATAATCCAGATCTAGCAGATGAGTTGGAA
GCTAAGATCAGAGCGGAAGTTTCAGGTGTAGATCCTAATCTTGTTTTAGAAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

73.112

97.64

0.714
  recA Neisseria gonorrhoeae MS11

66.265

97.935

0.649
  recA Neisseria gonorrhoeae strain FA1090

66.265

97.935

0.649
  recA Neisseria gonorrhoeae MS11

66.265

97.935

0.649
  recA Ralstonia pseudosolanacearum GMI1000

68.987

93.215

0.643
  recA Glaesserella parasuis strain SC1401

64.759

97.935

0.634
  recA Bacillus subtilis subsp. subtilis str. 168

64.458

97.935

0.631
  recA Helicobacter pylori 26695

65.644

96.165

0.631
  recA Acinetobacter baylyi ADP1

65.944

95.28

0.628
  recA Helicobacter pylori strain NCTC11637

65.337

96.165

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.732

94.69

0.622
  recA Acinetobacter baumannii D1279779

65.015

95.28

0.619
  recA Pseudomonas stutzeri DSM 10701

64.396

95.28

0.614
  recA Streptococcus pyogenes NZ131

62.346

95.575

0.596
  recA Streptococcus pneumoniae Rx1

59.587

100

0.596
  recA Streptococcus pneumoniae R6

59.587

100

0.596
  recA Streptococcus pneumoniae TIGR4

59.587

100

0.596
  recA Streptococcus pneumoniae D39

59.587

100

0.596
  recA Streptococcus mitis NCTC 12261

59.644

99.41

0.593
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

94.395

0.59
  recA Vibrio cholerae strain A1552

62.5

94.395

0.59
  recA Streptococcus mitis SK321

60.121

97.64

0.587
  recA Lactococcus lactis subsp. cremoris KW2

61.801

94.985

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

95.87

0.584
  recA Streptococcus mutans UA159

59.202

96.165

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.407

95.575

0.549