Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA21_RS04865 Genome accession   NZ_CP094825
Coordinates   1008954..1010009 (+) Length   351 a.a.
NCBI ID   WP_262561990.1    Uniprot ID   -
Organism   Staphylococcus ureilyticus strain IVB6236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003954..1015009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA21_RS04840 (MUA21_04825) - 1004627..1005331 (+) 705 WP_046208616.1 SDR family oxidoreductase -
  MUA21_RS04845 (MUA21_04830) - 1005522..1006352 (+) 831 WP_046208615.1 DUF3388 domain-containing protein -
  MUA21_RS04850 (MUA21_04835) - 1006384..1006776 (+) 393 WP_080937823.1 RodZ family helix-turn-helix domain-containing protein -
  MUA21_RS04855 (MUA21_04840) pgsA 1006831..1007409 (+) 579 WP_046208613.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA21_RS04860 (MUA21_04845) - 1007636..1008787 (+) 1152 WP_107525965.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA21_RS04865 (MUA21_04850) recA 1008954..1010009 (+) 1056 WP_262561990.1 recombinase RecA Machinery gene
  MUA21_RS04870 (MUA21_04855) rny 1010341..1011900 (+) 1560 WP_107525866.1 ribonuclease Y -
  MUA21_RS04875 (MUA21_04860) - 1012309..1012524 (-) 216 WP_046208610.1 hypothetical protein -
  MUA21_RS04880 (MUA21_04865) - 1012690..1013481 (+) 792 WP_046208609.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38169.26 Da        Isoelectric Point: 5.0231

>NTDB_id=673476 MUA21_RS04865 WP_262561990.1 1008954..1010009(+) (recA) [Staphylococcus ureilyticus strain IVB6236]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGIAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDMMYGKGISKEGELIDLGVENEIVNKSGAWYSYNGERMGQGKENVKLYLKENPKVKQEIDQ
KLREKLGIFDGDIDEKEEEDAPATLFDEKDE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=673476 MUA21_RS04865 WP_262561990.1 1008954..1010009(+) (recA) [Staphylococcus ureilyticus strain IVB6236]
TTGGATAATGATCGTCAAAAAGCTTTAGATACAGTAATTAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ACTTGGTGATAATGAAGCACGTAAAGTTTCTAGTGTATCAAGTGGTTCGGTAACACTAGATAACGCATTAGGAGTTGGTG
GTTACCCTAAAGGTAGAATCATAGAAATATATGGGCCAGAAAGTTCTGGTAAAACAACAGTTGCATTACATGCCATAGCC
GAGGTACAAAAAAATGGTGGTATCGCTGCATTTATTGATGCTGAACATGCTTTAGACCCTGTTTATGCAGAAGCATTAGG
TGTTGATATTCAAAACTTATACTTATCTCAACCAGATCATGGTGAGCAAGGCTTAGAAATCGCTGAAGCATTTGTTAGAA
GTGGTGCGGTTGATATCGTCGTTGTCGATTCAGTAGCTGCGTTAACACCGAAGGCTGAAATTGAAGGCGAAATGGGCGAT
ACACATGTCGGTTTACAAGCACGTTTAATGTCACAAGCATTACGTAAATTGTCTGGTGCTATTTCTAAATCAAATACAAC
TGCTGTATTTATAAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAATCCTGAAACGACACCAGGTGGACGTGCAT
TAAAATTCTATAGTTCTGTACGTTTAGAAGTTCGTCGTGCTGAACAGTTGAAACAAGGTCAAGAAATTGTTGGTAACAGA
ACAAAAATCAAAGTGGTAAAAAACAAAGTAGCACCTCCATTTAGAGTGGCTGAAGTTGATATGATGTACGGAAAAGGTAT
CTCTAAAGAAGGAGAGCTCATAGACCTTGGTGTAGAAAATGAAATCGTTAATAAATCGGGTGCTTGGTATTCATATAATG
GTGAGCGTATGGGTCAAGGTAAAGAAAACGTTAAATTATATTTAAAAGAAAATCCAAAAGTTAAACAAGAAATCGATCAG
AAATTGCGAGAAAAACTAGGTATTTTTGATGGTGATATAGATGAAAAAGAGGAAGAAGATGCACCAGCTACACTTTTTGA
TGAAAAAGATGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.074

92.877

0.707
  recA Latilactobacillus sakei subsp. sakei 23K

69.591

97.436

0.678
  recA Streptococcus pyogenes NZ131

67.781

93.732

0.635
  recA Streptococcus mitis NCTC 12261

64.723

97.721

0.632
  recA Streptococcus pneumoniae R6

64.912

97.436

0.632
  recA Streptococcus pneumoniae Rx1

64.912

97.436

0.632
  recA Streptococcus pneumoniae D39

64.912

97.436

0.632
  recA Streptococcus pneumoniae TIGR4

64.912

97.436

0.632
  recA Streptococcus mutans UA159

65

96.866

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.244

98.006

0.63
  recA Neisseria gonorrhoeae MS11

64.244

98.006

0.63
  recA Neisseria gonorrhoeae MS11

64.244

98.006

0.63
  recA Acinetobacter baylyi ADP1

64.14

97.721

0.627
  recA Streptococcus mitis SK321

66.066

94.872

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.163

94.302

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.742

93.732

0.607
  recA Acinetobacter baumannii D1279779

65.031

92.877

0.604
  recA Helicobacter pylori 26695

64.329

93.447

0.601
  recA Helicobacter pylori strain NCTC11637

64.024

93.447

0.598
  recA Vibrio cholerae strain A1552

64.11

92.877

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.11

92.877

0.595
  recA Ralstonia pseudosolanacearum GMI1000

65.815

89.174

0.587
  recA Pseudomonas stutzeri DSM 10701

62.27

92.877

0.578
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.302

0.573
  recA Glaesserella parasuis strain SC1401

61.801

91.738

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

91.168

0.553