Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA52_RS07580 Genome accession   NZ_CP094814
Coordinates   1545076..1546119 (-) Length   347 a.a.
NCBI ID   WP_037564613.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6175     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540076..1551119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA52_RS07560 (MUA52_07560) - 1540513..1540731 (+) 219 WP_037564606.1 hypothetical protein -
  MUA52_RS07565 (MUA52_07565) rny 1540975..1542534 (-) 1560 WP_060550931.1 ribonuclease Y -
  MUA52_RS07570 (MUA52_07570) - 1542974..1544260 (-) 1287 WP_316964058.1 collagen-binding domain-containing protein -
  MUA52_RS07575 (MUA52_07575) - 1544209..1544685 (-) 477 WP_262617803.1 YSIRK-type signal peptide-containing protein -
  MUA52_RS07580 (MUA52_07580) recA 1545076..1546119 (-) 1044 WP_037564613.1 recombinase RecA Machinery gene
  MUA52_RS07585 (MUA52_07585) - 1546267..1547433 (-) 1167 WP_262617804.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA52_RS07590 (MUA52_07590) pgsA 1547533..1548117 (-) 585 WP_037564617.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA52_RS07595 (MUA52_07595) - 1548161..1548556 (-) 396 WP_060550928.1 RodZ family helix-turn-helix domain-containing protein -
  MUA52_RS07600 (MUA52_07600) - 1548569..1549441 (-) 873 WP_060550927.1 DUF3388 domain-containing protein -
  MUA52_RS07605 (MUA52_07605) ymfI 1549493..1550197 (-) 705 WP_262617805.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37833.81 Da        Isoelectric Point: 5.3307

>NTDB_id=673143 MUA52_RS07580 WP_037564613.1 1545076..1546119(-) (recA) [Staphylococcus agnetis strain IVB6175]
MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSVTLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSAAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISRQGELIDLGVQHDIVDKSGAWYSYNGERMGQGKENVKLFLKEHPDLENEIDR
KLREKLGIFDGDVEESEQDSPQTLFDE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=673143 MUA52_RS07580 WP_037564613.1 1545076..1546119(-) (recA) [Staphylococcus agnetis strain IVB6175]
TTGGATAATGAACGTCAAAAAGCACTCGATACAGTAATTAAAAATATGGAAAAATCTTTTGGGAAAGGTGCCGTTATGAA
ACTTGGCGAAAATAAAGATCGTCGTGTTTCTAGCGTGTCTAGTGGTTCTGTAACATTAGATCATGCATTAGGTGTAGGTG
GCTATCCTAAAGGCCGTATTATAGAAGTTTATGGACCTGAAAGCTCAGGTAAAACTACCGTAGCCTTACATGCCATTGCA
GAAGTACAAAAAAATGGCGGCGTGGCTGCATTTATTGACGCAGAACATGCACTTGATCCCGTTTATGCACAAGCTTTAGG
TGTAGATATTGATAACTTATATTTATCGCAACCGGACCATGGTGAGCAAGGCCTTGAAATTGCTGAGGCGTTCGTTCGTA
GTGGCGCGGTCGACATTATTATCGTAGACTCAGTTGCTGCGTTAACACCGAAAGCTGAAATTGAAGGTGAGATGGGCGAT
ACGCATGTCGGTTTACAAGCACGTCTAATGTCTCAAGCTCTACGTAAATTATCGGCAGCAATTTCTAAATCAAATACGAC
TGCCATTTTTATTAACCAAATTCGTGAGAAAGTGGGGGTTATGTTTGGTAACCCTGAAACGACACCAGGTGGTCGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTACGTCGTGCGGAACAATTAAAACAAGGGCAAGACATTGTCGGTAACCGT
ACGAAAATTAAAGTGGTTAAAAATAAAGTTGCACCACCATTTAAAGTAGCTGAAGTCGATATCATGTATGGTCAAGGCAT
TTCTCGACAAGGTGAACTGATTGACCTTGGTGTACAACATGATATTGTAGACAAGTCTGGAGCTTGGTATTCTTATAATG
GTGAACGCATGGGTCAAGGTAAAGAAAACGTGAAGTTATTCTTAAAAGAACATCCTGACTTAGAAAATGAAATTGACCGT
AAACTCCGTGAAAAATTAGGTATTTTCGATGGAGATGTTGAAGAAAGTGAGCAAGACTCACCACAAACGTTATTTGATGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.687

93.948

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

71.261

98.271

0.7
  recA Streptococcus pyogenes NZ131

69.605

94.813

0.66
  recA Streptococcus mutans UA159

65.33

100

0.657
  recA Streptococcus pneumoniae Rx1

66.569

98.271

0.654
  recA Streptococcus pneumoniae D39

66.569

98.271

0.654
  recA Streptococcus pneumoniae R6

66.569

98.271

0.654
  recA Streptococcus pneumoniae TIGR4

66.569

98.271

0.654
  recA Streptococcus mitis NCTC 12261

65.103

98.271

0.64
  recA Streptococcus mitis SK321

65.103

98.271

0.64
  recA Lactococcus lactis subsp. cremoris KW2

65.861

95.389

0.628
  recA Acinetobacter baumannii D1279779

62.069

100

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

97.983

0.622
  recA Neisseria gonorrhoeae MS11

60.807

100

0.608
  recA Neisseria gonorrhoeae strain FA1090

60.807

100

0.608
  recA Neisseria gonorrhoeae MS11

60.807

100

0.608
  recA Acinetobacter baylyi ADP1

64.417

93.948

0.605
  recA Vibrio cholerae strain A1552

63.804

93.948

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.804

93.948

0.599
  recA Helicobacter pylori 26695

63.11

94.524

0.597
  recA Helicobacter pylori strain NCTC11637

62.805

94.524

0.594
  recA Ralstonia pseudosolanacearum GMI1000

64.537

90.202

0.582
  recA Pseudomonas stutzeri DSM 10701

61.35

93.948

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.389

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.069

91.931

0.571
  recA Glaesserella parasuis strain SC1401

60.991

93.084

0.568