Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MUA71_RS08485 Genome accession   NZ_CP094806
Coordinates   1725334..1726386 (-) Length   350 a.a.
NCBI ID   WP_262614868.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain IVB6234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720334..1731386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA71_RS08470 (MUA71_08435) - 1722130..1722921 (-) 792 WP_002511014.1 TIGR00282 family metallophosphoesterase -
  MUA71_RS08475 (MUA71_08440) - 1723083..1723298 (+) 216 WP_002511013.1 hypothetical protein -
  MUA71_RS08480 (MUA71_08445) rny 1723376..1724935 (-) 1560 WP_002511012.1 ribonuclease Y -
  MUA71_RS08485 (MUA71_08450) recA 1725334..1726386 (-) 1053 WP_262614868.1 recombinase RecA Machinery gene
  MUA71_RS08490 (MUA71_08455) - 1726540..1727688 (-) 1149 WP_002511010.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA71_RS08495 (MUA71_08460) pgsA 1727828..1728406 (-) 579 WP_002511009.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA71_RS08500 (MUA71_08465) - 1728451..1728843 (-) 393 WP_002511008.1 RodZ family helix-turn-helix domain-containing protein -
  MUA71_RS08505 (MUA71_08470) - 1728877..1729707 (-) 831 WP_002511007.1 DUF3388 domain-containing protein -
  MUA71_RS08510 (MUA71_08475) ymfI 1729845..1730549 (-) 705 WP_002511006.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38101.04 Da        Isoelectric Point: 4.8715

>NTDB_id=672955 MUA71_RS08485 WP_262614868.1 1725334..1726386(-) (recA) [Staphylococcus arlettae strain IVB6234]
MDNERQKALDTVIKNMEKSFGKGSVMKLGDNKARRVSSVSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQRNGGIAAFIDAEHALDPVYAEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVVEVDIMYGKGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQGKENVKTYLKENPEIKKDIDQ
KLREKLGIFDGDIEETEESEEATPNLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=672955 MUA71_RS08485 WP_262614868.1 1725334..1726386(-) (recA) [Staphylococcus arlettae strain IVB6234]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAAAAATCATTTGGTAAAGGTTCAGTGATGAA
ATTAGGCGACAATAAAGCTCGCAGAGTATCAAGTGTTTCGAGTGGTTCTGTAACATTGGATAATGCCTTAGGAGTAGGTG
GTTATCCTAAAGGAAGAATTATTGAAATCTATGGACCAGAAAGTTCAGGTAAAACGACTGTTGCATTACATGCTATAGCT
GAAGTACAAAGAAATGGTGGAATTGCAGCATTTATCGATGCCGAACACGCACTTGACCCTGTTTATGCTGAAGCTTTAGG
TGTCGATATTGATAATTTATATTTATCACAACCTGACCACGGAGAACAAGGTCTTGAAATCGCAGAGGCTTTTGTTAGAA
GTGGTGCGGTAGATATCGTAGTAGTAGACTCAGTTGCAGCATTAACGCCAAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTAGGCTTACAAGCAAGATTAATGTCTCAAGCGTTACGTAAACTATCAGGGGCAATTTCTAAATCTAACACTAC
TGCAGTATTTATTAACCAAATCCGTGAAAAAGTAGGCGTTATGTTCGGTAATCCTGAAACAACACCTGGTGGACGTGCAT
TGAAATTCTACAGTTCAGTGCGTTTAGAAGTACGTCGTGCAGAGCAATTAAAACAAGGTCAAGACATTGTAGGTAATAGA
ACAAAAATTAAAGTTGTTAAAAATAAAGTGGCACCTCCTTTCAGAGTAGTAGAAGTTGATATTATGTACGGGAAAGGTAT
TTCTAAAGAAGGTGAACTTATCGATTTAGGTGTTGAAAATGATATAGTCGATAAGTCAGGCGCATGGTATTCATATAATG
GAGAGCGTATGGGTCAAGGTAAGGAAAATGTAAAAACTTATCTAAAAGAAAACCCTGAAATTAAAAAGGATATTGATCAA
AAATTACGTGAAAAATTAGGTATTTTTGATGGTGATATCGAAGAAACCGAAGAATCCGAAGAAGCAACACCGAATTTATT
CGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

77.301

93.143

0.72
  recA Latilactobacillus sakei subsp. sakei 23K

68.103

99.429

0.677
  recA Streptococcus mitis SK321

63.812

100

0.66
  recA Streptococcus pneumoniae Rx1

65.714

100

0.657
  recA Streptococcus pneumoniae D39

65.714

100

0.657
  recA Streptococcus pneumoniae R6

65.714

100

0.657
  recA Streptococcus pneumoniae TIGR4

65.714

100

0.657
  recA Streptococcus mitis NCTC 12261

64.773

100

0.651
  recA Streptococcus mutans UA159

65.698

98.286

0.646
  recA Streptococcus pyogenes NZ131

67.477

94

0.634
  recA Lactococcus lactis subsp. cremoris KW2

65.861

94.571

0.623
  recA Acinetobacter baylyi ADP1

62.356

99.429

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

97.429

0.62
  recA Neisseria gonorrhoeae MS11

65.046

94

0.611
  recA Neisseria gonorrhoeae MS11

65.046

94

0.611
  recA Neisseria gonorrhoeae strain FA1090

65.046

94

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.644

93.143

0.611
  recA Vibrio cholerae strain A1552

65.644

93.143

0.611
  recA Acinetobacter baumannii D1279779

65.031

93.143

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.914

93.429

0.597
  recA Helicobacter pylori 26695

63.415

93.714

0.594
  recA Helicobacter pylori strain NCTC11637

63.11

93.714

0.591
  recA Pseudomonas stutzeri DSM 10701

60.117

97.429

0.586
  recA Glaesserella parasuis strain SC1401

62.346

92.571

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.121

94.571

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.429

0.566